Steven E Brenner

发表

Precision Medicine: Improving health through high-resolution analysis of personal data.

Predrag Radivojac, Steven E Brenner, Martha Bulyk, 2019, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

PRECISION MEDICINE: DATA AND DISCOVERY FOR IMPROVED HEALTH AND THERAPY.

Alexander A. Morgan, Steven E Brenner, Dana C Crawford, 2017, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Outcome of a workshop on applications of protein models in biomedical research.

Roland L Dunbrack, Roland L. Dunbrack, Andrej Sali, 2009, Structure.

SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins - extended Database.

Steven E Brenner, John-Marc Chandonia, Naomi K Fox, 2017, Journal of molecular biology.

Precision Medicine: Addressing the Challenges of Sharing, Analysis, and Privacy at Scale.

Predrag Radivojac, Steven E Brenner, Dana C Crawford, 2020, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Automated multi-model reconstruction from single-particle electron microscopy data.

Jitendra Malik, Steven E Brenner, Eva Nogales, 2010, Journal of structural biology.

Supporting Online Material Materials and Methods Figs. S1 to S50 Tables S1 to S18 References Identification of Functional Elements and Regulatory Circuits by Drosophila Modencode

Gos Micklem, Lincoln D Stein, Daniel Marbach, 2022 .

Navigating ethical quandaries with the privacy dilemma of biomedical datasets

John Wilbanks, Steven E Brenner, Gamze Gürsoy, 2019, PSB.

The Impact of Structural Genomics: Expectations and Outcomes

Steven E Brenner, John-Marc Chandonia, S. Brenner, 2005, Science.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI

Yuedong Yang, Olivier Lichtarge, Giovanni Minervini, 2017, Human mutation.

Structural studies of the Nudix hydrolase DR1025 from Deinococcus radiodurans and its ligand complexes.

Steven E Brenner, E. L. Holbrook, Stephen R Holbrook, 2004, Journal of molecular biology.

Planning the Human Variome Project: The Spain report

Toshio Kojima, John M. Hancock, Sue Povey, 2009, Human mutation.

PRECISION MEDICINE: DATA AND DISCOVERY FOR IMPROVED HEALTH AND THERAPY.

Alexander A. Morgan, Steven E Brenner, Alexander A Morgan, 2016, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Optimal and fast rotational alignment of volumes with missing data in Fourier space.

Robert M Glaeser, Steven E Brenner, Maxim Shatsky, 2013, Journal of structural biology.

The RNA Ontology Consortium: an open invitation to the RNA community.

James W. Brown, Helen M Berman, Steven E Brenner, 2006, RNA.

Phylogenetic molecular function annotation.

Steven E Brenner, Michael I Jordan, Barbara E Engelhardt, 2009, Journal of physics. Conference series.

Target selection and deselection at the Berkeley Structural Genomics Center

Steven E Brenner, John-Marc Chandonia, S. Brenner, 2005, Proteins.

Automated particle correspondence and accurate tilt-axis detection in tilted-image pairs.

Jitendra Malik, Robert M Glaeser, Steven E Brenner, 2014, Journal of structural biology.

Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported*

Steven E Brenner, Steven C Hall, Susan J Fisher, 2016, Molecular & Cellular Proteomics.

Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: Recurrence of tyrosine aminotransferase activity in the Iα subfamily

Michael I. Jordan, Steven E Brenner, Michael I Jordan, 2013, Proteins.

Assessing computational predictions of the phenotypic effect of cystathionine‐beta‐synthase variants

Silvio C. E. Tosatto, Predrag Radivojac, Mauno Vihinen, 2019, Human mutation.

Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs.

Steven E Brenner, Marco Blanchette, Emmanuel Labourier, 2004, Molecular cell.

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

Li Yang, Steven E Brenner, Angela N. Brooks, 2015, Genome research.

Computational prediction of membrane-tethered transcription factors

Steven E Brenner, Joel Zupicich, S. Brenner, 2001, Genome Biology.

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

Rob Knight, Steven E Brenner, David A W Soergel, 2012, The ISME Journal.

Reports from CAGI: The Critical Assessment of Genome Interpretation

Steven E Brenner, Daniel Barsky, John Moult, 2017, Human mutation.

Structural genomics and structural biology: compare and contrast

Steven E Brenner, John-Marc Chandonia, Thomas N Earnest, 2004, Genome Biology.

Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns.

Steven E Brenner, Makio Tamura, Stephen R Holbrook, 2004, Nucleic acids research.

Conservation of an RNA regulatory map between Drosophila and mammals.

Li Yang, Steven E Brenner, Sandrine Dudoit, 2011, Genome research.

Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges

Alexander A. Morgan, Yanay Ofran, Predrag Radivojac, 2017, Human mutation.

Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation

Steven E Brenner, John Moult, Lipika R Pal, 2019, Human mutation.

Genome-wide Analysis of Alternative Pre-mrna Splicing and Rna-binding Specificities of the Drosophila Hnrnp A/b Family Members

Steven E Brenner, Angela N. Brooks, Marco Blanchette, 2022 .

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

Steven E Brenner, Haiyan Huang, Peter J Bickel, 2014, Genome research.

Genome-scale phylogenetic function annotation of large and diverse protein families.

Michael I. Jordan, Steven E Brenner, Michael I Jordan, 2011, Genome research.

Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI‐5

Olivier Lichtarge, Emidio Capriotti, Kivilcim Ozturk, 2019, Human mutation.

Measurements of protein sequence–structure correlations

Steven E Brenner, Jason Wolfe, Gavin E Crooks, 2004, Proteins.