Burkhard Rost

Daniel Cremers, Burkhard Rost, Fridtjof Nüsslin, 2018, Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics.

ISMB 2008 Organization

Burkhard Rost, Anna Tramontano, Alfonso Valencia, 2008, ISMB.

Correction to: Detailed prediction of protein sub-nuclear localization

Burkhard Rost, Mikael Bodén, Tatyana Goldberg, 2019, BMC Bioinformatics.

LocText: relation extraction of protein localizations to assist database curation

Burkhard Rost, Lars Juhl Jensen, Aleksandar Bojchevski, 2018, BMC Bioinformatics.

Establishment of an interdisciplinary workflow of machine learning-based Radiomics in sarcoma patients

Daniel Cremers, Burkhard Rost, Fridtjof Nüsslin, 2017 .

LOCnet and LOCtarget: sub-cellular localization for structural genomics targets

Burkhard Rost, Rajesh Nair, B. Rost, 2004, Nucleic Acids Res..

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles

Burkhard Rost, Steven J. Marygold, Gillian H. Millburn, 2014, Database J. Biol. Databases Curation.

nala: text mining natural language mutation mentions

Burkhard Rost, Aleksandar Bojchevski, Sanjeev Kumar Karn, 2017, Bioinform..

TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures

Burkhard Rost, B. Rost, 1995, ISMB.

PROFcon: novel prediction of long-range contacts

Burkhard Rost, Marco Punta, B. Rost, 2005, Bioinform..

Paving the future: finding suitable ISMB venues

Burkhard Rost, Thomas Lengauer, Michal Linial, 2012, Bioinform..

Natively unstructured regions in proteins identified from contact predictions

Avner Schlessinger, Burkhard Rost, Marco Punta, 2007, Bioinform..

Learning from Evolution to Predict Protein Structure

Burkhard Rost, 1997, BCEC.

Visualizing Human Protein‐Protein Interactions and Subcellular Localizations on Cell Images Through CellMap

Burkhard Rost, Tatyana Goldberg, Gregorio Alanis-Lobato, 2020, Current protocols in bioinformatics.

The Protein Structure Initiative

Burkhard Rost, Christine A. Orengo, Adam Godzik, 2010 .

Modeling aspects of the language of life through transfer-learning protein sequences

Burkhard Rost, Yu Wang, Florian Matthes, 2019, BMC Bioinformatics.

ISMB/ECCB 2007 Conference Proceedings

Burkhard Rost, Thomas Lengauer, Peter Schuster, 2007 .

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

Burkhard Rost, Thomas Lengauer, Peter D. Karp, 2015, PLoS Computational Biology.

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

Tin Wee Tan, Burkhard Rost, Janet Kelso, 2011, BMC Bioinformatics.

NLSdb: database of nuclear localization signals

Burkhard Rost, Phil Carter, Rajesh Nair, 2003, Nucleic Acids Res..

ISMB 2005 Organization

Burkhard Rost, David J. States, H. V. Jagadish, 2005, ISMB.

Static benchmarking of membrane helix predictions

Burkhard Rost, Andrew Kernytsky, A. Kernytsky, 2003, Nucleic Acids Res..

Evaluation of template‐based models in CASP8 with standard measures

Burkhard Rost, Anna Tramontano, Domenico Cozzetto, 2009, Proteins.

Variant effect predictions capture some aspects of deep mutational scanning experiments

Burkhard Rost, Jonas Reeb, Theresa Wirth, 2019, BMC Bioinformatics.

LocTree3 prediction of localization

Burkhard Rost, Tobias Hamp, Robert Greil, 2014, Nucleic Acids Res..

DSSPcont: continuous secondary structure assignments for proteins

Burkhard Rost, Phil Carter, Claus A. F. Andersen, 2003, Nucleic Acids Res..

Annotating Protein Function through Lexical Analysis

Burkhard Rost, Rajesh Nair, B. Rost, 2004, AI Mag..

Correlating protein function and stability through the analysis of single amino acid substitutions

Burkhard Rost, Yana Bromberg, B. Rost, 2009, BMC Bioinformatics.

NORSp: predictions of long regions without regular secondary structure

Burkhard Rost, Jinfeng Liu, B. Rost, 2003, Nucleic Acids Res..

ProfPPIdb: pairs of physical protein-protein interactions predicted for entire proteomes

Burkhard Rost, Tobias Hamp, Linh Tran, 2018 .

Correcting mistakes in predicting distributions

Burkhard Rost, Michael Bernhofer, Valérie Marot-Lassauzaie, 2018, Bioinform..

FunFam protein families improve residue level molecular function prediction

Burkhard Rost, Christine Orengo, Maria Littmann, 2019, BMC Bioinformatics.

Ismb 2005

Burkhard Rost, David J. States, H. V. Jagadish, 2005, ISMB.

End-to-end multitask learning, from protein language to protein features without alignments

Burkhard Rost, Michael Heinzinger, Ahmed Elnaggar, 2019, bioRxiv.

HFSP: high speed homology-driven function annotation of proteins

Burkhard Rost, Yana Bromberg, Yannick Mahlich, 2018, Bioinform..

Ismb 2002

Burkhard Rost, Janice I. Glasgow, 2002, ISMB.

ISCB: past-present perspective for the International Society for Computational Biology

Burkhard Rost, 2013, Bioinform..

META-PP: single interface to crucial prediction servers

Burkhard Rost, Volker A. Eyrich, B. Rost, 2003, Nucleic Acids Res..

A platform for integrating threading results with protein family analyses

Burkhard Rost, Alfonso Valencia, Florencio Pazos, 1999, Bioinform..

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

Create and assess protein networks through molecular characteristics of individual proteins

Burkhard Rost, Yanay Ofran, Guy Yachdav, 2006, ISMB.

NMPdb: Database of Nuclear Matrix Proteins

Burkhard Rost, Sven Mika, B. Rost, 2004, Nucleic Acids Res..

Linked annotations: a middle ground for manual curation of biomedical databases and text corpora

Burkhard Rost, Lars Juhl Jensen, Juan Miguel Cejuela, 2015, BMC Proceedings.

Inferring sub-cellular localization through automated lexical analysis

Burkhard Rost, Rajesh Nair, B. Rost, 2002, ISMB.

Variant effect predictions capture some aspects of deep mutational scanning experiments

Burkhard Rost, Jonas Reeb, Theresa Wirth, 2020, BMC Bioinformatics.

Protein–Protein Interactions More Conserved within Species than across Species

Burkhard Rost, Sven Mika, B. Rost, 2006, PLoS Comput. Biol..

ISMB 2008 Toronto

Jill P. Mesirov, Burkhard Rost, Michal Linial, 2008, PLoS Comput. Biol..

Prediction of DNA-binding residues from sequence

Burkhard Rost, Yanay Ofran, Venkatesh Mysore, 2007, ISMB/ECCB.

UniqueProt: creating representative protein sequence sets

Burkhard Rost, Sven Mika, B. Rost, 2003, Nucleic Acids Res..

Faculty Opinions recommendation of Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

Burkhard Rost, 2002 .

NLSdb—major update for database of nuclear localization signals and nuclear export signals

Burkhard Rost, Mikael Bodén, Mohamed Ahmed, 2017, Nucleic Acids Res..

Exercising Multi-Layered Networks on Protein Secondary Structure

Burkhard Rost, Chris Sander, 1992, Int. J. Neural Syst..

LOC3D: annotate sub-cellular localization for protein structures

Burkhard Rost, Rajesh Nair, B. Rost, 2003, Nucleic Acids Res..

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP)

Burkhard Rost, Mikael Bodén, Julian Zaugg, 2019, bioRxiv.

Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming

Burkhard Rost, Piero Fariselli, Rita Casadio, 1996, ISMB.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

Tools and data services registry: a community effort to document bioinformatics resources

Silvio C. E. Tosatto, Anthony Bretaudeau, Burkhard Rost, 2015, Nucleic Acids Res..

Anatomy of BioJS, an open source community for the life sciences

Burkhard Rost, Devasena Inupakutika, Manuel Corpas, 2015, eLife.

SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity

Burkhard Rost, Sandeep Kaur, Matt Adcock, 2020 .

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data

Burkhard Rost, Eytan Ruppin, Nir Ben-Tal, 2010, Nucleic Acids Res..

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

Burkhard Rost, Yanay Ofran, Reinhard Schneider, 2009, Current opinion in drug discovery & development.

ISCB Computational Biology Wikipedia Competition

Burkhard Rost, Alex Bateman, Predrag Radivojac, 2013, PLoS Comput. Biol..

Linked annotations: a middle ground for manual curation of biomedical databases and text corpora

Burkhard Rost, Lars Juhl Jensen, Juan Miguel Cejuela, 2015 .

The PredictProtein server

Burkhard Rost, Jinfeng Liu, Guy Yachdav, 2003, Nucleic Acids Res..

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence

Burkhard Rost, Paolo Frasconi, Andrea Passerini, 2008, Bioinform..

NLProt: extracting protein names and sequences from papers

Burkhard Rost, Sven Mika, B. Rost, 2004, Nucleic Acids Res..

PROFbval: predict flexible and rigid residues in proteins

Avner Schlessinger, Burkhard Rost, Guy Yachdav, 2006, Bioinform..

ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes

Burkhard Rost, Tobias Hamp, Linh Tran, 2018, bioRxiv.

Improving fold recognition without folds.

Burkhard Rost, Dariusz Przybylski, B. Rost, 2004, Journal of molecular biology.

AI and Bioinformatics

Burkhard Rost, Igor Jurisica, Janice I. Glasgow, 2004, AI Mag..