Chih-Chiang Tsou

New targeted approaches for the quantification of data‐independent acquisition mass spectrometry

Alexey I Nesvizhskii, Roland Bruderer, Lukas Reiter, 2017, Proteomics.

mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry.

Hyungwon Choi, Alexey I Nesvizhskii, Anne-Claude Gingras, 2015, Journal of proteomics.

A multi-center study benchmarks software tools for label-free proteome quantification

Yasset Perez-Riverol, Brendan MacLean, Ruedi Aebersold, 2016, Nature Biotechnology.

QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics.

Hyungwon Choi, Alexey I Nesvizhskii, Damian Fermin, 2015, Journal of proteomics.

Untargeted, spectral library‐free analysis of data‐independent acquisition proteomics data generated using Orbitrap mass spectrometers

Alexey I Nesvizhskii, Guo Ci Teo, Yu-Ju Chen, 2016, Proteomics.

Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry.

Alexey I Nesvizhskii, Ting-Yi Sung, Wai-Kok Choong, 2015, Journal of proteome research.

An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer

Err-Cheng Chan, Chia-Feng Tsai, Chih-Chiang Tsou, 2011, Molecular & Cellular Proteomics.

An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion.

Wen-Lian Hsu, Ting-Yi Sung, Yu-Ju Chen, 2010, Journal of proteome research.