Ryan Brenke

发表

ClusPro: Performance in CAPRI rounds 6–11 and the new server

Stephen R Comeau, Dima Kozakov, Ryan Brenke, 2007, Proteins.

Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase

Dima Kozakov, Ryan Brenke, Dmitri Beglov, 2009, J. Comput. Aided Mol. Des..

Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19

Stephen R Comeau, Dima Kozakov, Ryan Brenke, 2010, Proteins.

Docking with PIPER and refinement with SDU in rounds 6–11 of CAPRI

Stephen R Comeau, Dima Kozakov, Ryan Brenke, 2007, Proteins.

Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques

Dima Kozakov, Ryan Brenke, Dmitri Beglov, 2009, Bioinform..

Application of asymmetric statistical potentials to antibody-protein docking

Dima Kozakov, Ryan Brenke, Dmitri Beglov, 2012, Bioinform..

DARS (Decoys As the Reference State) potentials for protein-protein docking.

Stephen R Comeau, Dima Kozakov, Ryan Brenke, 2008, Biophysical journal.

Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde

Dima Kozakov, Ryan Brenke, Dmitri Beglov, 2012, Nucleic acids research.

Binding hot spots and amantadine orientation in the influenza a virus M2 proton channel.

Dima Kozakov, Ryan Brenke, Dmitri Beglov, 2009, Biophysical journal.

Minimal ensembles of side chain conformers for modeling protein–protein interactions

Roland L Dunbrack, Roland L. Dunbrack, Dima Kozakov, 2012, Proteins.