Hidetoshi Kono

发表

Combinatorial protein design strategies using computational methods.

Wei Wang, Hidetoshi Kono, Jeffery G Saven, 2007, Methods in molecular biology.

Spotting the difference in molecular dynamics simulations of biomolecules.

Hidetoshi Kono, Shun Sakuraba, H. Kono, 2016, The Journal of chemical physics.

Distinct Roles of Histone H3 and H2A Tails in Nucleosome Stability

Zhenhai Li, Hidetoshi Kono, H. Kono, 2016, Scientific Reports.

Molecular dynamics study on mobility and dipole ordering of solvent around proteins: effects of periodic-box size and protein charge

Haruki Nakamura, Junichi Higo, Hiroki Shirai, 1999 .

Computational design of water-soluble analogues of the potassium channel KcsA

Jeffery G. Saven, Hidetoshi Kono, William F. DeGrado, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Phase retrieval from single biomolecule diffraction pattern.

Shiro Ikeda, Hidetoshi Kono, S. Ikeda, 2011, Optics express.

Accessibility of the histone H3 tail in the nucleosome for binding of paired readers

Michael G. Poirier, Tatiana G. Kutateladze, Catherine A. Musselman, 2017, Nature Communications.

Role of inter and intramolecular interactions in protein-DNA recognition.

Samuel Selvaraj, M Michael Gromiha, Hidetoshi Kono, 2005, Gene.

Sequence-dependent DNA deformability studied using molecular dynamics simulations

Satoshi Fujii, Hidetoshi Kono, Akinori Sarai, 2007, Nucleic acids research.

Target Prediction of Transcription Factors: Refinement of Structure-Based Method

M. Michael Gromiha, Samuel Selvaraj, Ponraj Prabakaran, 2001 .

ProTherm: Thermodynamic Database for Proteins and Mutants

M. Michael Gromiha, Jianghong An, Hidetoshi Kono, 1998 .

Classifying and assembling two-dimensional X-ray laser diffraction patterns of a single particle to reconstruct the three-dimensional diffraction intensity function: resolution limit due to the quantum noise

Hidetoshi Kono, Atsushi Tokuhisa, Nobuhiro Go, 2012, Acta crystallographica. Section A, Foundations of crystallography.

A generalized conformational energy function of DNA derived from molecular dynamics simulations

Kentaro Shimizu, Tohru Terada, Satoshi Yamasaki, 2009, Nucleic acids research.

Anatomy of specific interactions between lambda repressor and operator DNA.

Hidetoshi Kono, Akinori Sarai, Motohisa Oobatake, 2003, Proteins.

Intermolecular and intramolecular readout mechanisms in protein-DNA recognition.

Samuel Selvaraj, Hidetoshi Kono, Akinori Sarai, 2004, Journal of molecular biology.

Thermodynamic Database for Protein-Nucleic Acid Interactions

M. Michael Gromiha, Jianghong An, Samuel Selvaraj, 1999 .

Computational design and characterization of a monomeric helical dinuclear metalloprotein.

Hidetoshi Kono, Jeffery G Saven, Wei Wang, 2003, Journal of molecular biology.

A new method for evaluating the specificity of indirect readout in protein–DNA recognition

Kentaro Shimizu, Tohru Terada, Satoshi Yamasaki, 2012, Nucleic acids research.

Cavity-Filling Mutations Enhance Protein Stability by Lowering the Free Energy of Native State

Hidetoshi Kono, Tahir H. Tahirov, Kazuhiro Ogata, 2000 .

Anatomy of specific interactions between λ repressor and operator DNA

Hidetoshi Kono, Akinori Sarai, Motohisa Oobatake, 2003 .

Rotamer Libraries For Molecular Modeling And Design Of Proteins

Hidetoshi Kono, H. Kono, 2009 .

Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.

Takeo Tomita, Tsutomu Fujimura, Reiko Mineki, 2009, Nature chemical biology.

Importance of mutant position in Ramachandran plot for predicting protein stability of surface mutations.

M Michael Gromiha, Hidetoshi Kono, Akinori Sarai, 2002, Biopolymers.

Multicanonical Monte Carlo calculation of the free‐energy map of the base–amino acid interaction

M. Michael Gromiha, Hidetoshi Kono, Akinori Sarai, 2000 .

Local Conformational Changes in the DNA Interfaces of Proteins

Tomoko Sunami, Hidetoshi Kono, H. Kono, 2013, PloS one.

De novo design of a redox-active minimal rubredoxin mimic.

Vikas Nanda, Hidetoshi Kono, Jeffery G Saven, 2005, Journal of the American Chemical Society.

Probabilistic approach to the design of symmetric protein quaternary structures.

Hidetoshi Kono, Jeffery G Saven, Xiaoran Fu, 2003, Protein engineering.

Two Arginine Residues Suppress the Flexibility of Nucleosomal DNA in the Canonical Nucleosome Core

Hidetoshi Kono, H. Kono, H. Kurumizaka, 2015, PloS one.

Recent Developments in ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions

M. Michael Gromiha, Jianghong An, Samuel Selvaraj, 2001 .