Jonathan Schug

发表

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data

Li Li, Dinesh Gupta, Jonathan Crabtree, 2003, Nucleic Acids Res..

Modeling and analyzing biomolecular networks

Vijay Kumar, Calin Belta, George J. Pappas, 2002, Comput. Sci. Eng..

A relational schema for both array-based and SAGE gene expression experiments

Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, 2001, Bioinform..

Tissue-specific regulation of mouse MicroRNA genes in endoderm-derived tissues

Yan Gao, Jonathan Schug, Klaus H. Kaestner, 2010, Nucleic Acids Res..

Mitochondrial genome sequence analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy

Jonathan Schug, Avni Santani, Xiaowu Gai, 2011, BMC Bioinformatics.

K2/Kleisli and GUS: Experiments in integrated access to genomic data sources

Val Tannen, Susan B. Davidson, Jonathan Crabtree, 2001, IBM Syst. J..

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished)

Li Li, Dinesh Gupta, Jonathan Crabtree, 2002, Nucleic Acids Res..

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)

Brian P. Brunk, Gregory R. Grant, Jonathan Schug, 2011, Bioinform..

Visual Programming for Modeling and Simulation of Biomolecular Regulatory Networks

Vijay Kumar, Calin Belta, Rajeev Alur, 2002, HiPC.

Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding

Jonathan Schug, G. Christian Overton, J. Schug, 1997, ISMB.

Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus

Jonathan Schug, Kyoung-Jae Won, David E. Condon, 2018, BMC Bioinformatics.

Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL)

Max Mintz, Jonathan Schug, Christian J. Stoeckert, 2007, DILS.

EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes

Peter White, Jonathan Schug, Christian J. Stoeckert, 2006, Nucleic Acids Res..

Glucocorticoid Receptor-Dependent Gene Regulatory Networks

Jonathan Schug, J. Schug, K. Kaestner, 2005, PLoS genetics.

Propagation of adipogenic signals through an epigenomic transition state.

Jonathan Schug, Elisabetta Manduchi, Christian J Stoeckert, 2010, Genes & development.

PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale.

Jonathan Schug, Christian J Stoeckert, Yong Zhang, 2008, Genes & development.

The Nucleosome Map of the Mammalian Liver

Jonathan Schug, Zhaoyu Li, Klaus H. Kaestner, 2011, Nature Structural &Molecular Biology.

Drug‐induced alterations in gene expression of the asexual blood forms of Plasmodium falciparum

Jonathan Schug, J. Schug, D. Wirth, 2003, Molecular microbiology.

Epigenetic regulation of the DLK1-MEG3 microRNA cluster in human type 2 diabetic islets.

Jonathan Schug, Kyoung-Jae Won, Kumar Vivek, 2014, Cell metabolism.

DNA methylation is required for the control of stem cell differentiation in the small intestine

Jonathan Schug, Lukas Burger, Dirk Schübeler, 2014, Genes & development.

Foxa2-dependent hepatic gene regulatory networks depend on physiological state.

Jonathan Schug, Bert W O'Malley, J. Schug, 2009, Physiological genomics.

The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity

Deborah Ferriola, Jonathan Schug, Xiaowu Gai, 2016, BMC Genomics.

Genome-wide analysis of histone modifications in human pancreatic islets.

Jonathan Schug, Olga Smirnova, Alan Fox, 2010, Genome research.

Widespread distribution of antisense transcripts in the Plasmodium falciparum genome.

Jonathan Schug, J. Schug, D. Roos, 2004, Molecular and biochemical parasitology.

Two novel type 2 diabetes loci revealed through integration of TCF7L2 DNA occupancy and SNP association data

Jonathan Schug, S. Grant, J. Schug, 2014, BMJ Open Diabetes Research and Care.

Genome-wide mapping of histone H4 serine-1 phosphorylation during sporulation in Saccharomyces cerevisiae

Jonathan Schug, J. Schug, S. Berger, 2010, Nucleic acids research.

Genome-wide analyses of ChIP-Seq derived FOXA2 DNA occupancy in liver points to genetic networks underpinning multiple complex traits.

Jonathan Schug, Klaus H. Kaestner, Struan F. A. Grant, 2014, The Journal of clinical endocrinology and metabolism.

Human islets contain four distinct subtypes of β cells

Jonathan Schug, J. Schug, K. Kaestner, 2016, Nature Communications.

MicroRNAs control intestinal epithelial differentiation, architecture, and barrier function.

Jonathan Schug, J. Schug, K. Kaestner, 2010, Gastroenterology.

Genome-wide analysis reveals conserved and divergent features of Notch1/RBPJ binding in human and murine T-lymphoblastic leukemia cells

Jonathan Schug, Bradley E. Bernstein, Jon C. Aster, 2011, Proceedings of the National Academy of Sciences.

Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells.

Jonathan Schug, Klaus H. Kaestner, Kyoung-Jae Won, 2013, Cell stem cell.