Matthew Berriman

发表

SchistoDB: an updated genome resource for the three key schistosomes of humans

Yixue Li, Jessica C. Kissinger, David S. Roos, 2012, Nucleic Acids Res..

ABACAS: algorithm-based automatic contiguation of assembled sequences

Thomas M. Keane, Matthew Berriman, Samuel A. Assefa, 2009, Bioinform..

BamView: viewing mapped read alignment data in the context of the reference sequence

Matthew Berriman, Thomas D. Otto, Tim J. Carver, 2010, Bioinform..

The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms

Amit P. Sheth, Priti Parikh, Christian J. Stoeckert, 2012, J. Biomed. Semant..

DNAPlotter: circular and linear interactive genome visualization

Matthew Berriman, Tim J. Carver, Julian Parkhill, 2008, Bioinform..

Viewing and Annotating Sequence Data with Artemis

Matthew Berriman, Kim Rutherford, M. Berriman, 2003, Briefings Bioinform..

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

Matthew Berriman, Thomas D. Otto, Chris Newbold, 2010, Bioinform..

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

Geoffrey J. Barton, Matthew Berriman, David M. A. Martin, 2004, BMC Bioinformatics.

WormBase 2017: molting into a new stage

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2017, Nucleic Acids Res..

Classification of EST clusters using Gene Ontology TM

Matthew Berriman, Neil Hall, S Lehane, 2011 .

BamView: visualizing and interpretation of next-generation sequencing read alignments

Matthew Berriman, Thomas D. Otto, Tim J. Carver, 2012, Briefings Bioinform..

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei

Rainer Breitling, Michael P. Barrett, Ludovic Cottret, 2014, Nucleic Acids Res..

WormBase 2014: new views of curated biology

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2013, Nucleic Acids Res..

WormBase 2012: more genomes, more data, new website

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2011, Nucleic Acids Res..

TrypanoCyc – a metabolic pathway database for Trypanosoma brucei

Matthew Berriman, Christiane Hertz-Fowler, Bridget Bannerman-Chukualim, 2008, BMC Bioinformatics.

GeneDB—an annotation database for pathogens

Haiming Wang, Andrew Jackson, Brian P. Brunk, 2011, Nucleic Acids Res..

The Gene Ontology project in 2008

Giorgio Valle, Kimberly Van Auken, Paul W. Sternberg, 2007, Nucleic Acids Res..

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

Matthew Berriman, Tim J. Carver, Julian Parkhill, 2011, Bioinform..

Companion: a web server for annotation and analysis of parasite genomes

Brian P. Brunk, Matthew Berriman, Thomas D. Otto, 2016, Nucleic Acids Res..

WormBase 2016: expanding to enable helminth genomic research

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2015, Nucleic Acids Res..

TriTrypDB: a functional genomic resource for the Trypanosomatidae

Eileen Kraemer, Haiming Wang, John A. Miller, 2009, Nucleic Acids Res..

ACT: the Artemis comparison tool

Matthew Berriman, Kim Rutherford, Tim J. Carver, 2005, Bioinform..

GeneDB: a resource for prokaryotic and eukaryotic organisms

Matthew Berriman, Neil Hall, Kim Rutherford, 2004, Nucleic Acids Res..

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

Matthew Berriman, Tim J. Carver, Ulrike Böhme, 2008, Bioinform..

Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens

John P. Overington, David S. Roos, Matthew Berriman, 2010, BMC Bioinformatics.