Patrick Kemmeren

发表

ArrayExpress: a public database of gene expression data at EBI.

Sergio Contrino, Helen Parkinson, Susanna-Assunta Sansone, 2003, Comptes rendus biologies.

A framework for exhaustive modelling of genetic interaction patterns using Petri nets

Jaap Heringa, Annika Jacobsen, K Anton Feenstra, 2019, Bioinform..

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

Olga Ivanova, Jaap Heringa, Annika Jacobsen, 2019, PLoS Comput. Biol..

An Evaluation of Active Learning Causal Discovery Methods for Reverse-Engineering Local Causal Pathways of Gene Regulation

Constantin F. Aliferis, Sisi Ma, Alexander Statnikov, 2016, Scientific reports.

Trecode: a FAIR eco-system for the analysis and archiving of omics data in a combined diagnostic and research setting

Patrick Kemmeren, Hindrik HD Kerstens, Jayne Y Hehir-Kwa, 2020, bioRxiv.

Cell cycle population effects in perturbation studies

Philip Lijnzaad, Thanasis Margaritis, Patrick Kemmeren, 2014, Molecular systems biology.

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions

Philip Lijnzaad, Berend Snel, Katrin Sameith, 2015, BMC Biology.

Growth condition dependency is the major cause of non-responsiveness upon genetic perturbation

Patrick Kemmeren, Saman Amini, P. Kemmeren, 2017, PloS one.

The Genomic Landscape of Compensatory Evolution

Balázs Papp, Gábor Boross, Károly Kovács, 2014, PLoS biology.

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

Philip Lijnzaad, Thessa T. J. P. Kockelkorn, Marijana Radonjic, 2005, Molecular cell.

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system

Sjoerd J de Vries, Rolf Boelens, Patrick Kemmeren, 2009, Molecular systems biology.

The specificity and topology of chromatin interaction pathways in yeast.

Philip Lijnzaad, Thanasis Margaritis, Thomas Hentrich, 2011, Molecular cell.

Multiple robust signatures for detecting lymph node metastasis in head and neck cancer.

Patrick Kemmeren, Paul Roepman, P. Kemmeren, 2006, Cancer research.

Adaptable gene-specific dye bias correction for two-channel DNA microarrays

Philip Lijnzaad, Thanasis Margaritis, Patrick Kemmeren, 2009, Molecular systems biology.

A consensus of core protein complex compositions for Saccharomyces cerevisiae.

Philip Lijnzaad, Patrick Kemmeren, P. Kemmeren, 2010, Molecular cell.

An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas

Philip Lijnzaad, Marcel J T Reinders, Patrick Kemmeren, 2005, Nature Genetics.

Epistatic relationships reveal the functional organization of yeast transcription factors

Nevan J Krogan, Hao Li, Frank Holstege, 2010, Molecular systems biology.