Bas van Breukelen

发表

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium

Lennart Martens, Harald Barsnes, Johannes Griss, 2012, Molecular & Cellular Proteomics.

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

Bas van Breukelen, Albert J. R. Heck, Pedro R. Cutillas, 2012, Amino Acids.

qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments*

Lennart Martens, Wout Bittremieux, Juan Antonio Vizcaíno, 2014, Molecular & Cellular Proteomics.

RockerBox: analysis and filtering of massive proteomics search results.

Reinout Raijmakers, Albert J R Heck, Javier Muñoz, 2011, Journal of proteome research.

Molecular Systems Biology Peer Review Process File Rock1 Is a Potential Combinatorial Drug Target for Braf Mutant Melanoma Transaction Report

Bas van Breukelen, Salvatore Cappadona, Salvatore Cappadona, 2022 .

Evaluating Experimental Bias and Completeness in Comparative Phosphoproteomics Analysis

Jos Boekhorst, Berend Snel, Bas van Breukelen, 2011, PloS one.

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

Jos Boekhorst, Berend Snel, Bas van Breukelen, 2008, Genome Biology.

Identification of enriched PTM crosstalk motifs from large-scale experimental data sets.

Albert J R Heck, Bas van Breukelen, M. Peng, 2014, Journal of proteome research.

Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and highly abundant AKAP.

Albert J R Heck, Bas van Breukelen, A. Scholten, 2006, Journal of proteome research.

Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

Albert J R Heck, Shabaz Mohammed, Bas van Breukelen, 2011, Journal of proteome research.

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

Marcel J T Reinders, Albert J R Heck, Bas van Breukelen, 2007, Microbiology.

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

Joost W Gouw, Albert J R Heck, Shabaz Mohammed, 2008, Journal of proteome research.

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels

Andreas O Helbig, Shabaz Mohammed, Bas van Breukelen, 2010, BMC Genomics.

Deconvolution of overlapping isotopic clusters improves quantification of stable isotope-labeled peptides.

Javier Muñoz, Shabaz Mohammed, Bas van Breukelen, 2011, Journal of proteomics.