Liam J. McGuffin

发表

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

Liam J. McGuffin, Daniel B. Roche, L. McGuffin, 2010, Bioinform..

The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms

Liam J. McGuffin, Stefano A. Street, Kevin Bryson, 2004, Nucleic Acids Res..

Benchmarking consensus model quality assessment for protein fold recognition

Liam J. McGuffin, L. McGuffin, 2007, BMC Bioinformatics.

What are the baselines for protein fold recognition?

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2001, Bioinform..

The ModFOLD4 server for the quality assessment of 3D protein models

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2013, Nucleic Acids Res..

Prediction of global and local model quality in CASP8 using the ModFOLD server

Liam J. McGuffin, 2009, Proteins.

The DISOPRED server for the prediction of protein disorder

Bernard F. Buxton, Liam J. McGuffin, Kevin Bryson, 2004, Bioinform..

Estimating the Quality of 3D Protein Models Using the ModFOLD7 Server.

Liam J. McGuffin, Ali H. A. Maghrabi, L. McGuffin, 2020, Methods in molecular biology.

Automatic prediction of functional site regions in low-resolution protein structures

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

Liam J. McGuffin, Daniel B. Roche, Stuart J. Tetchner, 2011, BMC Bioinformatics.

Improving sequence-based fold recognition by using 3D model quality assessment

Liam J. McGuffin, David T. Jones, David T. Jones, 2005, Bioinform..

Improvement of the GenTHREADER Method for Genomic Fold Recognition

Liam J. McGuffin, David T. Jones, David T. Jones, 2003, Bioinform..

Benchmarking protein secondary structure prediction for protein fold recognition

Liam J. McGuffin, David T. Jones, 2003 .

Automatic prediction of functional site regions in low-resolution protein structures

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2004 .

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences

Liam J. McGuffin, Daniel B. Roche, Jennifer D. Atkins, 2015, Nucleic Acids Res..

The binding site distance test score: a robust method for the assessment of predicted protein binding sites

Liam J. McGuffin, Daniel B. Roche, Stuart J. Tetchner, 2010, Bioinform..

The PSIPRED protein structure prediction server

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2000, Bioinform..

Methods for estimation of model accuracy in CASP12

Arne Elofsson, Keehyoung Joo, Karolis Uziela, 2017 .

Protein structure prediction and structural annotation of proteomes

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2018 .

Prediction of protein-protein and protein-ligand interactions from protein structures

Liam J. McGuffin, Kevin Bryson, J. S. Sodhi, 2005 .

Secondary structure prediction with support vector machines

Bernard F. Buxton, Liam J. McGuffin, David T. Jones, 2003, Bioinform..

PINOT: an intuitive resource for integrating protein-protein interactions

Liam J. McGuffin, John Hardy, Patrick A. Lewis, 2019, Cell Communication and Signaling.

Model Quality Prediction

Liam J. McGuffin, L. McGuffin, 2010 .

The FunFOLD2 server for the prediction of protein–ligand interactions

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2013, Nucleic Acids Res..

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

Liam J. McGuffin, L. McGuffin, 2008, Bioinform..

High throughput profile-profile based fold recognition for the entire human proteome

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2006, BMC Bioinformatics.

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2011, Nucleic Acids Res..

Protein structure prediction servers at University College London

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2005, Nucleic Acids Res..

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012, Bioinform..

The ModFOLD server for the quality assessment of protein structural models

Liam J. McGuffin, L. McGuffin, 2008, Bioinform..

ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models

Liam J. McGuffin, Ali H. A. Maghrabi, L. McGuffin, 2017, Nucleic Acids Res..

Protein Fold Recognition and Threading

Liam J. McGuffin, 2008 .

ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates

Liam J. McGuffin, Robert Kempster, Ahmad N. Shuid, 2017, Nucleic Acids Res..

The Genomic Threading Database

Liam J. McGuffin, Stefano A. Street, David T. Jones, 2004, Bioinform..

Predicting protein structures and structural annotation of proteomes

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012 .

Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies

Liam J. McGuffin, Jennifer D. Atkins, L. McGuffin, 2015, International journal of molecular sciences.

FunFOLDQA: A Quality Assessment Tool for Protein-Ligand Binding Site Residue Predictions

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012, PloS one.

A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3)

Liam J. McGuffin, Angela Clerk, L. McGuffin, 2012, The Biochemical journal.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.

Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system

Liam J. McGuffin, David J. Studholme, Michael A. Brockhurst, 2015, Science.