Daniel B. Roche

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Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

Liam J. McGuffin, Daniel B. Roche, L. McGuffin, 2010, Bioinform..

The ModFOLD4 server for the quality assessment of 3D protein models

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2013, Nucleic Acids Res..

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

Liam J. McGuffin, Daniel B. Roche, Stuart J. Tetchner, 2011, BMC Bioinformatics.

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences

Liam J. McGuffin, Daniel B. Roche, Jennifer D. Atkins, 2015, Nucleic Acids Res..

The binding site distance test score: a robust method for the assessment of predicted protein binding sites

Liam J. McGuffin, Daniel B. Roche, Stuart J. Tetchner, 2010, Bioinform..

Protein structure prediction and structural annotation of proteomes

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2018 .

The FunFOLD2 server for the prediction of protein–ligand interactions

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2013, Nucleic Acids Res..

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2011, Nucleic Acids Res..

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012, Bioinform..

DisProt 7.0: a major update of the database of disordered proteins

Sonia Longhi, Silvio C. E. Tosatto, Arne Elofsson, 2016, Nucleic Acids Res..

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.

Predicting protein structures and structural annotation of proteomes

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012 .

Toolbox for Protein Structure Prediction.

Daniel B. Roche, Daniel Barry Roche, Liam James McGuffin, 2016, Methods in molecular biology.

In silico Identification and Characterization of Protein-Ligand Binding Sites.

Daniel B. Roche, Daniel Barry Roche, Liam James McGuffin, 2016, Methods in molecular biology.

The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone

Daniel B. Roche, T. Brüls, 2015, Protein science : a publication of the Protein Society.

FunFOLDQA: A Quality Assessment Tool for Protein-Ligand Binding Site Residue Predictions

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012, PloS one.

Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

Daniel B. Roche, J. Colinge, C. B. Mamoun, 2017, Malaria Journal.

Classification of β-hairpin repeat proteins.

Daniel B. Roche, S. Tosatto, A. Kajava, 2017, Journal of structural biology.

Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules

Daniel B. Roche, X. Xuan, E. Cornillot, 2017, PloS one.

Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms

Daniel B. Roche, A. Kajava, Etienne Villain, 2017, Protein science : a publication of the Protein Society.

DisProt 7.0: a major update of the database of disordered proteins

Daniel B. Roche, Damiano Piovesan, A. Dunker, 2016, Nucleic Acids Res..

DisProt 7.0: a major update of the database of disordered proteins

Daniel B. Roche, Damiano Piovesan, A. Dunker, 2016, Nucleic acids research.

The FunFOLD 2 server for the prediction of protein ligand interactions

Daniel B. Roche, Maria T. Buenavista, L. McGuffin, 2013 .

Neurotoxicity of a Biopesticide Analog on Zebrafish Larvae at Nanomolar Concentrations

Daniel B. Roche, A. Ghysen, L. Chaloin, 2016, International journal of molecular sciences.

The stability of Fbw7α in M-phase requires its phosphorylation by PKC

Daniel B. Roche, Sihem Zitouni, V. Baldin, 2017, PloS one.

Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods

Daniel B. Roche, Liam J McGuffin, Ali H. A. Maghrabi, 2018, Proteins.

TAPO: A combined method for the identification of tandem repeats in protein structures

Daniel B. Roche, A. Kajava, Andrey V. Kajava, 2015, FEBS letters.

Proteins and Their Interacting Partners: An Introduction to Protein–Ligand Binding Site Prediction Methods

Daniel B. Roche, Daniel Barry Roche, Danielle Allison Brackenridge, 2015, International journal of molecular sciences.

Assessing the quality of modelled 3D protein structures using the ModFOLD server.

Daniel B. Roche, Maria T. Buenavista, Daniel Barry Roche, 2014, Methods in molecular biology.

The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone

Daniel B. Roche, T. Brüls, 2015, Protein science : a publication of the Protein Society.

Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method

Daniel B. Roche, Liam J McGuffin, Daniel B Roche, 2011, Proteins.