Alberto D. Pascual-Montano

发表

Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases

José María Carazo, Pedro A. de Alarcón, Alberto D. Pascual-Montano, 2002, CIVR.

Modulating the Expression of Disease Genes with RNA-Based Therapy

Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano, 2006, BMC Bioinformatics.

Modeling shape and topology of 3D images of biological specimens

Amarnath Gupta, José María Carazo, Alberto D. Pascual-Montano, 2002, Object recognition supported by user interaction for service robots.

Gene expression modular analysis: an overview from the data mining perspective

Alberto D. Pascual-Montano, A. Pascual-Montano, 2011, WIREs Data Mining Knowl. Discov..

U-Compare bio-event meta-service: compatible BioNLP event extraction services

Jari Björne, Tapio Salakoski, Halil Kilicoglu, 2011, BMC Bioinformatics.

bioNMF: a versatile tool for non-negative matrix factorization in biology

Francisco Tirado, José María Carazo, Monica Chagoyen, 2006, BMC Bioinformatics.

NMF-mGPU: non-negative matrix factorization on multi-GPU systems

Francisco Tirado, Alberto D. Pascual-Montano, Carlos García, 2015, BMC Bioinformatics.

Named Entity Recognition and Normalization: A Domain-Specific Language Approach

Monica Chagoyen, Alberto D. Pascual-Montano, Miguel Vázquez, 2008, IWPACBB.

CentrosomeDB: a human centrosomal proteins database

José María Carazo, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, 2008, Nucleic Acids Res..

Smoothly distributed fuzzy c-means: a new self-organizing map

José María Carazo, Alberto D. Pascual-Montano, Roberto D. Pascual-Marqui, 2001, Pattern Recognit..

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning

Alberto D. Pascual-Montano, Eduardo Gonzalez-Couto, Carlos Oscar Sánchez Sorzano, 2015, Nucleic Acids Res..

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2010, Nucleic Acids Res..

A literature-based similarity metric for biological processes

José María Carazo, Monica Chagoyen, Alberto D. Pascual-Montano, 2006, BMC Bioinformatics.

Nonsmooth nonnegative matrix factorization (nsNMF)

Dietrich Lehmann, José María Carazo, Alberto D. Pascual-Montano, 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information

Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano, 2009, Nucleic Acids Res..

Assessment of protein set coherence using functional annotations

José María Carazo, Monica Chagoyen, Alberto D. Pascual-Montano, 2008, BMC Bioinformatics.

SENT: semantic features in text

Francisco Tirado, José María Carazo, Monica Chagoyen, 2009, Nucleic Acids Res..

Discovering semantic features in the literature: a foundation for building functional associations

Hagit Shatkay, José María Carazo, Monica Chagoyen, 2006, BMC Bioinformatics.

Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library

Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano, 2009, BioLINK@ISMB/ECCB.

Biclustering and classification analysis in gene expression using Nonnegative Matrix Factorization on multi-GPU systems

Francisco Tirado, Manuel Prieto, Alberto D. Pascual-Montano, 2011, 2011 11th International Conference on Intelligent Systems Design and Applications.

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data

José María Carazo, Alberto D. Pascual-Montano, Pedro Carmona-Saez, 2008, Bioinform..

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

Laura Inés Furlong, Walter Daelemans, Dietrich Rebholz-Schuhmann, 2011, Semantic Mining in Biomedicine.

A Speculative Parallel Algorithm for Self-Organizing Maps

Manuel Prieto, Alberto D. Pascual-Montano, Carlos García, 2005, PARCO.

Two-way clustering of gene expression profiles by sparse matrix factorization

Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster

Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Joao Miguel da Conceiçao Alves-Cruzeiro, 2013, Nucleic Acids Res..

Parallelism on the Nonnegative Matrix Factorization

Francisco Tirado, Christian Tenllado, Alberto D. Pascual-Montano, 2011, PARCO.

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics

Alberto D. Pascual-Montano, Daniel Tabas-Madrid, Rubén Nogales-Cadenas, 2012, Nucleic Acids Res..

3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy

Alberto D. Pascual-Montano, Florence Tama, Slavica Jonic, 2013, Nucleic Acids Res..

Finding closed frequent item sets by intersecting transactions

Christian Borgelt, Alberto D. Pascual-Montano, Xiaoyuan Yang, 2011, EDBT/ICDT '11.

bioNMF: a web-based tool for nonnegative matrix factorization in biology

Francisco Tirado, Alberto D. Pascual-Montano, Carlos García, 2008, Nucleic Acids Res..

Extraction of biomedical events using case-based reasoning

Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano, 2009, BioNLP@HLT-NAACL.

Integrated analysis of gene expression by association rules discovery

José María Carazo, Monica Chagoyen, Alberto D. Pascual-Montano, 2006, BMC Bioinformatics.

Engene: the processing and exploratory analysis of gene expression data

José María Carazo, Alberto D. Pascual-Montano, Oswaldo Trelles, 2003, Bioinform..

CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem

Mariana L. Neves, José María Carazo, Monica Chagoyen, 2008, BioNLP.

Optimization problems in electron microscopy of single particles

José María Carazo, Roberto Marabini, Alberto D. Pascual-Montano, 2006, Ann. Oper. Res..

Non-negative matrix factorization in bioinformatics: Towards understanding biological processes

Alberto D. Pascual-Montano, A. Pascual-Montano, 2008, 2008 IEEE International Symposium on Circuits and Systems.

A survey of dimensionality reduction techniques pdf

Alberto D. Pascual-Montano, Carlos Oscar Sánchez Sorzano, Javier Vargas, 2014, ArXiv.

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures

Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano, 2010, Nucleic Acids Res..

Moara: a Java library for extracting and normalizing gene and protein mentions

José María Carazo, Alberto D. Pascual-Montano, M. Neves, 2010, BMC Bioinformatics.