Chi Zhang

发表

M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data

Yu Zhang, Wennan Chang, Changlin Wan, 2019, BMC Bioinformatics.

MRHCA: a nonparametric statistics based method for hub and co-expression module identification in large gene co-expression network

Jing Zhao, Yu Zhang, Burair Alsaihati, 2018, Quantitative Biology.

DFVF: database of fungal virulence factors

Tao Lu, Bo Yao, Chi Zhang, 2012, Database J. Biol. Databases Curation.

Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework

Yan Wang, Bingqiang Liu, Qin Ma, 2019, Nucleic acids research.

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads

Jin Zhao, Ying Xu, Daming Zhu, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

LEAP: Highly accurate prediction of protein loop conformations by integrating coarse‐grained sampling and optimized energy scores with all‐atom refinement of backbone and side chains

Yaoqi Zhou, Chi Zhang, Shide Liang, 2014, J. Comput. Chem..

Identification of RNA silencing components in soybean and sorghum

Tao Lu, Bin Yu, Xiang Liu, 2014, BMC Bioinformatics.

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees

Jin Zhao, Daming Zhu, Chi Zhang, 2019, BMC Bioinformatics.

Prediction of antigenic epitopes on protein surfaces by consensus scoring

Chi Zhang, Martin Zacharias, Dandan Zheng, 2009, BMC Bioinformatics.

Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations

Maher Rizkalla, Zhi Huang, Kun Huang, 2020, BMC Medical Genomics.

Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions

Chi Zhang, Xia Ning, Kai Wang, 2020, BMC Medical Informatics and Decision Making.

A mapping-by-sequencing tool for searching causative genes in mutants

Chi Zhang, Shangang Jia, David Holding, 2017, 2017 IEEE International Conference on Electro Information Technology (EIT).

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data

Bingqiang Liu, Qin Ma, Sha Cao, 2019, Bioinform..

RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum

Chi Zhang, Gleb Moisseyev, Kiyoul Park, 2020, Database J. Biol. Databases Curation.

NanoAsPipe: A transcriptome analysis and alternative splicing detection pipeline for MinION long-read RNA-seq

Qian Du, Kan Liu, Chi Zhang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Innovating Computational Biology and Intelligent Medicine: ICIBM 2019 Special Issue

Kai Wang, Chi Zhang, Yan Guo, 2020, Genes.

Fuzzy clustering of CPP family in plants with evolution and interaction analyses

Tao Lu, Chi Zhang, Yongchao Dou, 2013, BMC Bioinformatics.

iVAR: Interactive visual analytics of radiomics features from large-scale medical images

Chi Zhang, Hongfeng Yu, Lina Yu, 2017, 2017 IEEE International Conference on Big Data (Big Data).

A novel function prediction approach using protein overlap networks

Chi Zhang, Daron M. Standley, Dandan Zheng, 2013, BMC Systems Biology.

Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations

Yaoqi Zhou, Song Liu, Chi Zhang, 2005, Nucleic Acids Res..

The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases

Chi Zhang, Lai Wei, Zhongming Zhao, 2019, BMC Bioinformatics.

Data-Driven Suboptimal Scheduling of Switched Systems

Chi Zhang, Jingang Zhao, Minggang Gan, 2020, Sensors.

Identification of differential alternative splicing events with an adjusted beta-distribution model

Qian Du, Kan Liu, Bin Yu, 2017, 2017 IEEE International Conference on Electro Information Technology (EIT).

MOESM1 of M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data

Wennan Chang, Changlin Wan, Sha Cao, 2019 .

Performance of communication-induced checkpointing algorithms

D. Manivannan, Chi Zhang, 2003, Comput. Syst. Sci. Eng..

A Low-Power Backscatter Modulation System Communicating Across Tens of Meters With Standards-Compliant Wi-Fi Transceivers

Patrick P. Mercier, Chi Zhang, Dinesh Bharadia, 2020, IEEE Journal of Solid-State Circuits.

Fast and accurate prediction of protein side-chain conformations

Chi Zhang, Daron M. Standley, Dandan Zheng, 2011, Bioinform..

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files

Shan-Shan Dong, Wei-Ming He, Jing-Jing Ji, 2020, bioRxiv.

Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design

Qin Liu, Chi Zhang, Lianming Du, 2018, Bioinform..

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

Bo Yao, Chi Zhang, Daron M. Standley, 2010, BMC Bioinformatics.

Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases

Chi Zhang, Lai Wei, Zhongming Zhao, 2020, BMC Bioinformatics.