Krzysztof Ginalski

发表

The RPSP: Web server for prediction of signal peptides

Dariusz Plewczynski, Leszek Rychlewski, Liisa Holm, 2007 .

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database

Dariusz Plewczynski, Michal Lazniewski, Krzysztof Ginalski, 2011, J. Comput. Chem..

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2014, J. Comput. Biol..

3D-Jury: A Simple Approach to Improve Protein Structure Predictions

Arne Elofsson, Leszek Rychlewski, Daniel Fischer, 2003, Bioinform..

Probabilistic Approach to Predicting Substrate Specificity of Methyltransferases

Andrzej Kudlicki, Teresa Szczepinska, Krzysztof Pawlowski, 2014, PLoS Comput. Biol..

Detecting distant homology with Meta-BASIC

Marcin von Grotthuss, Leszek Rychlewski, Nick V. Grishin, 2004, Nucleic Acids Res..

Target specific compound identification using a support vector machine.

Dariusz Plewczynski, Leszek Rychlewski, Uwe Koch, 2007, Combinatorial chemistry & high throughput screening.

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure

Marcin von Grotthuss, Jakub Pas, Leszek Rychlewski, 2003, Nucleic Acids Res..

VoteDock: Consensus docking method for prediction of protein–ligand interactions

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2011, J. Comput. Chem..

Detection of reliable and unexpected protein fold predictions using 3D-Jury

Leszek Rychlewski, Krzysztof Ginalski, K. Ginalski, 2003, Nucleic Acids Res..

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2006, BMC Bioinformatics.

Virtual high throughput screening using combined random forest and flexible docking.

Dariusz Plewczynski, Leszek Rychlewski, Krzysztof Ginalski, 2009, Combinatorial chemistry & high throughput screening.

The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification

Janusz M. Bujnicki, Anna Muszewska, Stanislaw Dunin-Horkawicz, 2014, Nucleic acids research.

The histone deacetylases sir2 and rpd3 act on ribosomal DNA to control the replication program in budding yeast.

Kazumasa Yoshida, Hugues Parrinello, Krzysztof Ginalski, 2014, Molecular cell.

BOF: a novel family of bacterial OB‐fold proteins

Leszek Rychlewski, Nick V Grishin, Krzysztof Ginalski, 2004, FEBS letters.

Prediction of signal peptides in protein sequences by neural networks.

Dariusz Plewczynski, Leszek Rychlewski, Lukasz Slabinski, 2008, Acta biochimica Polonica.

Halogenated benzimidazoles and benzotriazoles as inhibitors of the NTPase/helicase activities of hepatitis C and related viruses.

Sarah Schalinski, Krzysztof Ginalski, K. Ginalski, 2003, European journal of biochemistry.

AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update

Dariusz Plewczynski, Leszek Rychlewski, Adrian Tkacz, 2008, Journal of molecular modeling.

Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima

Ines Thiele, Adam Godzik, Ashley M Deacon, 2009, Science.

Sequence‐structure mapping errors in the PDB: OB‐fold domains

Ceslovas Venclovas, Krzysztof Ginalski, Č. Venclovas, 2004, Protein science : a publication of the Protein Society.

Addressing the issue of sequence‐to‐structure alignments in comparative modeling of CASP3 target proteins

Krzysztof Fidelis, Česlovas Venclovas, Krzysztof Ginalski, 1999, Proteins.

Protein structure prediction for the male-specific region of the human Y chromosome.

Leszek Rychlewski, Nick V Grishin, David Baker, 2004, Proceedings of the National Academy of Sciences of the United States of America.

A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome

Jan Komorowski, Marcin Kierczak, Jacek Koronacki, 2009, Bioinformatics and biology insights.

Protein domain of unknown function DUF1023 is an α/β hydrolase

Leszek Rychlewski, Nick V. Grishin, Krzysztof Ginalski, 2005 .

Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity.

Nick V Grishin, Xiaodong Wang, Krzysztof Ginalski, 2004, Proceedings of the National Academy of Sciences of the United States of America.

In Silico Prediction of SARS Protease Inhibitors by Virtual High Throughput Screening

Dariusz Plewczynski, Marcin Hoffmann, Krzysztof Ginalski, 2007, Chemical biology & drug design.

Comprehensive Structural and Substrate Specificity Classification of the Saccharomyces cerevisiae Methyltransferome

Leszek Rychlewski, Andrzej Kudlicki, Maga Rowicka, 2011, PloS one.

Application of 3D‐Jury, GRDB, and Verify3D in fold recognition

Jakub Pas, Leszek Rychlewski, Krzysztof Ginalski, 2003, Proteins.

Anti-HIV-1 activity of 3-deaza-adenosine analogs. Inhibition of S-adenosylhomocysteine hydrolase and nucleotide congeners.

Leszek Rychlewski, Janusz M Bujnicki, Witold R Rudnicki, 2003, European journal of biochemistry.

The interactome: predicting the protein-protein interactions in cells.

Krzysztof Ginalski, Dariusz Plewczyński, K. Ginalski, 2009, Cellular & molecular biology letters.

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily

Leszek Rychlewski, Anna Muszewska, Krzysztof Ginalski, 2012, Nucleic acids research.

Thermotoga maritima of Three-Dimensional Structural View of the Central Metabolic Network

Ines Thiele, Ying Zhang, Adam Godzik, 2011 .

Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human

Leszek Rychlewski, Krzysztof Ginalski, Krzysztof Kuchta, 2009, Nucleic acids research.

Protein domain of unknown function DUF1023 is an alpha/beta hydrolase.

Leszek Rychlewski, Nick V Grishin, Krzysztof Ginalski, 2005, Proteins.

A comprehensive update of the sequence and structure classification of kinases

Nick V Grishin, Krzysztof Ginalski, Hong Zhang, 2015 .

Determinants in nuclease specificity of Ape1 and Ape2, human homologues of Escherichia coli exonuclease III.

Krzysztof Ginalski, K. Ginalski, M. Hadi, 2002, Journal of molecular biology.