Amos Tanay

发表

Discovering statistically significant biclusters in gene expression data

Roded Sharan, Ron Shamir, Amos Tanay, 2002, ISMB.

MetaCell: analysis of single cell RNA-seq data using k-NN graph partitions

Aviezer Lifshitz, Yaniv Lubling, Amos Tanay, 2018, bioRxiv.

Spatial Clustering of Multivariate Genomic and Epigenomic Information

Amos Tanay, Rami Jaschek, A. Tanay, 2009, RECOMB.

SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices

Aviezer Lifshitz, Yaniv Lubling, Amos Tanay, 2017, bioRxiv.

Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites

Ron Shamir, Amos Tanay, Daniela Raijman, 2008, PLoS Comput. Biol..

MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing

Amos Tanay, Eyal David, Ido Amit, 2019, Nature Protocols.

Modeling transcription programs: inferring binding site activity and dose-response model optimization

Ron Shamir, Amos Tanay, 2003, RECOMB '03.

Widespread Compensatory Evolution Conserves DNA-Encoded Nucleosome Organization in Yeast

Amos Tanay, Eran Segal, Amir Bar, 2010, PLoS Comput. Biol..

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data.

Roded Sharan, Ron Shamir, Amos Tanay, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Multilevel Modeling and Inference of Transcription Regulation

Ron Shamir, Amos Tanay, 2004, J. Comput. Biol..

Biclustering Algorithms: A Survey

Roded Sharan, Ron Shamir, Amos Tanay, 2007 .

Computational expansion of genetic networks

Ron Shamir, Amos Tanay, 2001, ISMB.

The EXPANDER Integrated Platform for Transcriptome Analysis.

Roded Sharan, Ron Shamir, Ran Elkon, 2019, Journal of molecular biology.

Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line

Gangning Liang, Amos Tanay, Peter A. Jones, 2008, Proceedings of the National Academy of Sciences.

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell

Yaniv Lubling, Amos Tanay, Wendy Dean, 2015, Nature Protocols.

Single-cell characterization of haematopoietic progenitors and their trajectories in homeostasis and perturbed haematopoiesis

Yaniv Lubling, Amos Tanay, Andreas Trumpp, 2018, Nature Cell Biology.

Sequence context affects the rate of short insertions and deletions in flies and primates

Amos Tanay, Eric D Siggia, E. Siggia, 2008, Genome Biology.

Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization.

Amos Tanay, Giacomo Cavalli, A. Tanay, 2013, Current opinion in genetics & development.

Inferring divergence of context-dependent substitution rates in Drosophila genomes with applications to comparative genomics.

Amos Tanay, A. Tanay, Ran Chachick, 2012, Molecular biology and evolution.

Primate CpG Islands Are Maintained by Heterogeneous Evolutionary Regimes Involving Minimal Selection

Amos Tanay, Ephraim Kenigsberg, A. Tanay, 2011, Cell.

Prediction of acute myeloid leukaemia risk in healthy individuals

Paolo Vineis, Zhen Zhao, Amos Tanay, 2018, Nature.

The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome

Amos Tanay, Eyal David, Alon Harmelin, 2016, Cell.

Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila.

Amos Tanay, Eitan Yaffe, Giacomo Cavalli, 2014, Cell reports.

Intratumor DNA methylation heterogeneity reflects clonal evolution in aggressive prostate cancer.

Amos Tanay, Mathieu Lupien, Joachim Weischenfeldt, 2014, Cell reports.

UMI-4C for quantitative and targeted chromosomal contact profiling

Pedro Olivares-Chauvet, Zohar Mukamel, Omer Schwartzman, 2016, Nature Methods.

Deterministic direct reprogramming of somatic cells to pluripotency

Zohar Mukamel, Amos Tanay, Elad Chomsky, 2013, Nature.

Constitutive Nucleosome Depletion and Ordered Factor Assembly at the GRP78 Promoter Revealed by Single Molecule Footprinting

Amos Tanay, Peter A. Jones, Shinwu Jeong, 2006, PLoS genetics.

Robust 4C-seq data analysis to screen for regulatory DNA interactions

Amos Tanay, Wouter de Laat, Elzo de Wit, 2012, Nature Methods.

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium

Ron Shamir, Amos Tanay, Israel Steinfeld, 2005, Molecular systems biology.

Dissecting cellular crosstalk by sequencing physically interacting cells

Amos Tanay, Eyal David, Johannes U. Mayer, 2020, Nature Biotechnology.

Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos

Amos Tanay, Benjamin Leblanc, Bas Tolhuis, 2009, PLoS biology.

Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture

Amos Tanay, Zohar Yakhini, Eitan Yaffe, 2010, PLoS genetics.

Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues

Zohar Mukamel, Amos Tanay, Varda Rotter, 2012, Nature Genetics.

Extensive low-affinity transcriptional interactions in the yeast genome.

Amos Tanay, A. Tanay, 2006, Genome research.

Cell cycle dynamics of chromosomal organisation at single-cell resolution

Yaniv Lubling, Amos Tanay, Peter Fraser, 2016 .

Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma

Amos Tanay, Eyal David, Arnon Nagler, 2018, Nature Medicine.