Hiroyuki Toh

发表

Profile comparison revealed deviation from structural constraint at the positively selected sites

Hiroyuki Oda, Motonori Ota, Hiroyuki Toh, 2016, Biosyst..

2P-298 Improvement of SVM prediction of domain linker regions(The 46th Annual Meeting of the Biophysical Society of Japan)

Hiroyuki Toh, Teppei Ebina, Yutaka Kuroda, 2008 .

SeSAW: balancing sequence and structural information in protein functional mapping

Akira R. Kinjo, Haruki Nakamura, Hiroyuki Toh, 2010, Bioinform..

A Procedure for Estimating Cluster Boundaries in Gene Expression Profile Data

Hiroyuki Toh, Katsuhisa Horimoto, 2000 .

Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling

Hiroyuki Toh, Katsuhisa Horimoto, Sachiyo Aburatani, 2003, Signal Process..

Improvement in the accuracy of multiple sequence alignment program MAFFT.

Hiroyuki Toh, Kazutaka Katoh, Kei-ichi Kuma, 2005, Genome informatics. International Conference on Genome Informatics.

A method for comparing circular genomes from gene locations: application to mitochondrial genomes

Kentaro Mori, Hiroyuki Toh, Katsuhisa Horimoto, 1998, Bioinform..

ASIAN: a website for network inference

Kousuke Goto, Hiroyuki Toh, Nobuyoshi Sugaya, 2004, Bioinform..

Improvement in the Prediction of Disease-Gene Relationship by the Recommend Algorithm and its Application

Hiroyuki Toh, Shogo Satoyama, 2017 .

ASIAN web interface, through which expression profiles can be uploaded for hierarchical clustering w

Kousuke Goto, Hiroyuki Toh, Shigeru Saito, 2011 .

ASIAN: Automatic System for Inferring a Network from Gene Expression Profiles

Hiroyuki Toh, Katsuhisa Horimoto, 2001 .

Loop Length Dependent SVM Prediction of Domain Linkers

Hiroyuki Toh, Teppei Ebina, Yutaka Kuroda, 2008 .

GGIP: Structure and sequence‐based GPCR–GPCR interaction pair predictor

Yoshihiro Yamanishi, Akira Saito, Hiroyuki Toh, 2016, Proteins.

Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment

Atsuko Yamaguchi, Hiroyuki Toh, 2018, JIST.

GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures

Haruki Nakamura, Hiroyuki Toh, Daron M. Standley, 2005, BMC Bioinformatics.

ASIAN: A Web Site for Network Inference

Kousuke Goto, Hiroyuki Toh, Nobuyoshi Sugaya, 2003 .

ASIAN: a web server for inferring a regulatory network framework from gene expression profiles

Kousuke Goto, Hiroyuki Toh, Katsuhisa Horimoto, 2005, Nucleic Acids Res..

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

Kazutaka Katoh, Hiroyuki Toh, K. Katoh, 2007, Bioinform..

DROP: an SVM domain linker predictor trained with optimal features selected by random forest

Yutaka Kuroda, Hiroyuki Toh, Teppei Ebina, 2011, Bioinform..

Multiple alignment of DNA sequences with MAFFT.

Kazutaka Katoh, Hiroyuki Toh, George Asimenos, 2009, Methods in molecular biology.

Inference of Genetic Networks from Expression Profile by Graphical Gaussian Modeling

Hiroyuki Toh, Katsuhisa Horimoto, 2000 .

A local structural alignment method that accommodates with circular permutation

Hiroyuki Toh, Takaaki Hiroike, H. Toh, 2001 .

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2006, Bioinform..

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2005, Bioinform..

Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling

Hiroyuki Toh, Katsuhisa Horimoto, H. Toh, 2002, Bioinform..

Development of HocDB (Homology-Based Clustering DataBase), a Sequence Classification System for Database Searching

Hiroyuki Toh, Yoshinori Sato, Motokazu Ishikawa, 2003 .

ASH structure alignment package: Sensitivity and selectivity in domain classification

Haruki Nakamura, Hiroyuki Toh, Daron M. Standley, 2007, BMC Bioinformatics.

2P-236 An SVM-Domain Linker Prediction Trained with Optimized Features Selected by Random Forest(Bioinformatics:Structural genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

Hiroyuki Toh, Teppei Ebina, Yutaka Kuroda, 2009 .

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

Kazutaka Katoh, Hiroyuki Toh, K. Katoh, 2008, BMC Bioinformatics.

Inference of Protein-Protein Interactions by Using Co-evolutionary Information

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2007, AB.

A comparative study of conservation and variation scores

Fredrik Johansson, Hiroyuki Toh, H. Toh, 2010, BMC Bioinformatics.

Parallelization of the MAFFT multiple sequence alignment program

Kazutaka Katoh, Hiroyuki Toh, K. Katoh, 2010, Bioinform..

Two-Layered Genetic Network Drawings with Minimum Edge Crossings

Atsuko Yamaguchi, Hiroyuki Toh, 2001 .

Structural Equation Modeling for Systems Biology

Hiroyuki Toh, Sachiyo Aburatani, H. Toh, 2015 .

S08I2 Functional Annotation Sequence-weighted Structure Alignments(Bioinformatics in the Era of Structural Proteomics)

Haruki Nakamura, Hiroyuki Toh, Daron M. Standley, 2007 .

Modification of ASIAN: Deduction of a Framework of Gene Regulatory Systems from Expression Profile Data

Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto, 2002 .

Prediction of GPCR-GPCR interaction with sequence and structure information by Autoencoder

Hiroyuki Toh, Wataru Nemoto, Hiroaki Teruse, 2019 .

1P472 Domain linker prediction using a Support Vector Machine(SVM)(23. Bioinformatics, genomics and proteomics (I),Poster Session,Abstract,Meeting Program of EABS &BSJ 2006)

Takao Arai, Hiroyuki Toh, Teppei Ebina, 2006 .

Statistical estimation of cluster boundaries in gene expression profile data

Hiroyuki Toh, Katsuhisa Horimoto, H. Toh, 2001, Bioinform..

Relative von Neumann Entropy for Evaluating amino acid conservation

Fredrik Johansson, Hiroyuki Toh, H. Toh, 2010, J. Bioinform. Comput. Biol..

Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm

Hiroyuki Toh, 1997, Comput. Appl. Biosci..

2P432 A novel statistical prediction method for multiple protein-protein interaction interfaces(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Hiroyuki Toh, Wataru Nemoto, 2006 .

Recent developments in the MAFFT multiple sequence alignment program

Kazutaka Katoh, Hiroyuki Toh, K. Katoh, 2008, Briefings Bioinform..