Sergey Sheetlin

The ruzzo-tompa algorithm can find the maximal paths in weighted, directed graphs on a one-dimensional lattice

Leonardo Mariño-Ramírez, John L. Spouge, Sergey Sheetlin, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements

David Landsman, Kannan Tharakaraman, John L. Spouge, 2005, ISMB.

Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics

John L. Spouge, Maricel G. Kann, Hyrum D. Carroll, 2010, Bioinform..

Frameshift alignment: statistics and post-genomic applications

Martin C. Frith, John L. Spouge, Yonil Park, 2014, Bioinform..

New finite-size correction for local alignment score distributions

Ning Ma, Yonil Park, John L Spouge, 2012, BMC Research Notes.

Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements

Kannan Tharakaraman, John L. Spouge, David Landsman, 2006, BMC Bioinformatics.

Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps

John L. Spouge, Leonardo Mariño-Ramírez, Sergey Sheetlin, 2014, Int. J. Bioinform. Res. Appl..

ALP & FALP: C++ libraries for pairwise local alignment E-values

Martin C. Frith, John L. Spouge, Yonil Park, 2015, Bioinform..

ESTIMATING THE GUMBEL SCALE PARAMETER FOR LOCAL ALIGNMENT OF RANDOM SEQUENCES BY IMPORTANCE SAMPLING WITH STOPPING TIMES.

Yonil Park, John L Spouge, Sergey Sheetlin, 2009, Annals of statistics.

The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment

John L. Spouge, Yonil Park, Sergey Sheetlin, 2005, Nucleic acids research.