Alistair R R Forrest

发表

scMatch: a single-cell gene expression profile annotation tool using reference datasets

Rui Hou, Elena Denisenko, Alistair R R Forrest, 2019, Bioinform..

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

Yoshihide Hayashizaki, Hideya Kawaji, Marina Lizio, 2014, Nature Biotechnology.

Predicting cell-to-cell communication networks using NATMI

Rui Hou, Elena Denisenko, Jordan A. Ramilowski, 2020, Nature Communications.

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, bioRxiv.

Monitoring transcription initiation activities in rat and dog

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, Scientific Data.

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.

Jun Kawai, Yoshihide Hayashizaki, Yuki Hasegawa, 2010, Molecular immunology.

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2014, Genome research.

FANTOM5 CAGE profiles of human and mouse samples

Hiroshi Tanaka, Geoffrey J Faulkner, Sarah Klein, 2017, Scientific Data.

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

Geoffrey J Faulkner, Piero Carninci, Yoshihide Hayashizaki, 2017, PLoS genetics.

Phosphoregulators: protein kinases and protein phosphatases of mouse.

Thomas Huber, Timothy Ravasi, Alistair R R Forrest, 2003, Genome research.

Subcellular Localization of Mammalian Type II Membrane Proteins

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Traffic.

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2018, Open Biology.

Functional annotation of human long noncoding RNAs via molecular phenotyping.

Boris Lenhard, Lusy Handoko, Piero Carninci, 2020, Genome research.

The statistical geometry of transcriptome divergence in cell-type evolution and cancer

Cong Liang, Alistair R R Forrest, G. Wagner, 2015, Nature Communications.

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Geoffrey J Faulkner, Piero Carninci, Yoshihide Hayashizaki, 2008, Genomics.

A predictive computational framework for direct reprogramming between human cell types

Yoshihide Hayashizaki, Hai Fang, Enrico Petretto, 2016, Nature Genetics.