Robert K. Bradley

XRate: a fast prototyping, training and annotation tool for phylo-grammars

Ian Holmes, Carolin Kosiol, Nick Goldman, 2006, BMC Bioinformatics.

Fast Statistical Alignment

Lior Pachter, Jaeyoung Do, Ian Holmes, 2009, PLoS Comput. Biol..

Specific alignment of structured RNA: stochastic grammars and sequence annealing

Lior Pachter, Ian Holmes, Robert K. Bradley, 2008, Bioinform..

Transducers: an emerging probabilistic framework for modeling indels on trees

Ian Holmes, Robert K. Bradley, I. Holmes, 2007, Bioinform..

Evolutionary Triplet Models of Structured RNA

Ian Holmes, Robert K. Bradley, I. Holmes, 2009, PLoS Comput. Biol..