Kimberly Van Auken

发表

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation

Kimberly Van Auken, Joshua Jaffery, Juancarlos Chan, 2009, BMC Bioinformatics.

Textpresso - an Information Retrieval and Extraction System for Biological Literature

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2008, Ontologies and Text Mining for Life Sciences.

Overview of the gene ontology task at BioCreative IV

Jung-Hsien Chiang, Zhiyong Lu, Hongfang Liu, 2014, Database J. Biol. Databases Curation.

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

Kimberly Van Auken, Robert D. Finn, Cathy H. Wu, 2012, Database J. Biol. Databases Curation.

WormBase 2017: molting into a new stage

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2017, Nucleic Acids Res..

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

Li Ni, Kimberly Van Auken, Kara Dolinski, 2009, PLoS Comput. Biol..

BC4GO: a full-text corpus for the BioCreative IV GO task

Zhiyong Lu, Kimberly Van Auken, Hans-Michael Müller, 2014, Database J. Biol. Databases Curation.

WormBase: a comprehensive resource for nematode research

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2009, Nucleic Acids Res..

WormBase: better software, richer content

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2005, Nucleic Acids Res..

WormBase: a multi-species resource for nematode biology and genomics

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2004, Nucleic Acids Res..

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Jeyakumar Natarajan, Zhiyong Lu, K. Bretonnel Cohen, 2013, Database J. Biol. Databases Curation.

WormBase 2014: new views of curated biology

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2013, Nucleic Acids Res..

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature

Kimberly Van Auken, Hans-Michael Müller, Paul W. Sternberg, 2018, BMC Bioinformatics.

Automatic categorization of diverse experimental information in the bioscience literature

Kimberly Van Auken, Paul W. Sternberg, Xiaodong Wang, 2012, BMC Bioinformatics.

WormBase 2012: more genomes, more data, new website

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2011, Nucleic Acids Res..

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2004, Nucleic Acids Res..

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2012, Database J. Biol. Databases Curation.

Combining text mining and author participation to improve curation at WormBase

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2019 .

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology

Michel Dumontier, Kimberly Van Auken, Mark A. Musen, 2016, J. Biomed. Informatics.

The Gene Ontology project in 2008

Giorgio Valle, Kimberly Van Auken, Paul W. Sternberg, 2007, Nucleic Acids Res..

A guide to best practices for Gene Ontology (GO) manual annotation

Kimberly Van Auken, Rachael P. Huntley, Midori A. Harris, 2013, Database J. Biol. Databases Curation.

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

Kimberly Van Auken, Prudence Mutowo-Meullenet, Rachael P. Huntley, 2014, BMC Bioinformatics.

WormBase 2007

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2007, Nucleic Acids Res..

Overview of the interactive task in BioCreative V

Jeyakumar Natarajan, Shruti Rao, Zhiyong Lu, 2015, Database J. Biol. Databases Curation.

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase

Kimberly Van Auken, Juancarlos Chan, Paul W. Sternberg, 2020, Database J. Biol. Databases Curation.

WormBase 2016: expanding to enable helminth genomic research

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2015, Nucleic Acids Res..

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

Kimberly Van Auken, Midori A. Harris, Stacia R. Engel, 2020, bioRxiv.

WormBase: new content and better access

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2006, Nucleic Acids Res..

Reactome and the Gene Ontology: digital convergence of data resources

Kimberly Van Auken, Judith A. Blake, Benjamin M. Good, 2021, Bioinform..

Alliance of Genome Resources Portal: unified model organism research platform

Anushya Muruganujan, Kimberly Van Auken, Juancarlos Chan, 2019, Nucleic Acids Res..

Corpus Construction for the BioCreative IV GO Task

Zhiyong Lu, Kimberly Van Auken, Paul W. Sternberg, 2013 .

WormBase: a modern Model Organism Information Resource

Kimberly Van Auken, Juancarlos Chan, Paul W. Sternberg, 2019, Nucleic Acids Res..