Paul W. Sternberg

发表

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation

Kimberly Van Auken, Joshua Jaffery, Juancarlos Chan, 2009, BMC Bioinformatics.

The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience

Hans-Michael Müller, Paul W. Sternberg, Perry L. Miller, 2008, Neuroinformatics.

The Logic of Computation in Biological Regulatory Networks

Paul W. Sternberg, Jehoshua Bruck, 2002 .

Textpresso - an Information Retrieval and Extraction System for Biological Literature

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2008, Ontologies and Text Mining for Life Sciences.

Gene Ontology Consortium: going forward

Juancarlos Chan, Hans-Michael Müller, Paul W. Sternberg, 2014, Nucleic Acids Res..

The Gene Ontology: enhancements for 2011

María Martín, Juancarlos Chan, Paul W. Sternberg, 2011, Nucleic Acids Res..

Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework

Paul W. Sternberg, Perry L. Miller, Maryann E. Martone, 2008, Neuroinformatics.

Automated generation of gene summaries at the Alliance of Genome Resources

Juancarlos Chan, Paul W. Sternberg, Stacia R. Engel, 2020, Database J. Biol. Databases Curation.

Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community

Paul W. Sternberg, Gary Schindelman, Jolene Fernandes, 2011, BMC Bioinformatics.

A compact optofluidic microscope

Paul W. Sternberg, Demetri Psaltis, David Erickson, 2006, SPIE Optics + Photonics.

Synaptic polarity of the interneuron circuit controlling C. elegans locomotion

Paul W. Sternberg, Franciszek Rakowski, Jagan Srinivasan, 2013, Front. Comput. Neurosci..

WormBase: network access to the genome and biology of Caenorhabditis elegans

Paul W. Sternberg, Lincoln Stein, Jean Thierry-Mieg, 2001, Nucleic Acids Res..

WormBase 2017: molting into a new stage

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2017, Nucleic Acids Res..

WormBook: the online review of Caenorhabditis elegans biology

Paul W. Sternberg, Lincoln Stein, Todd W. Harris, 2006, Nucleic Acids Res..

Automated generation of modular of gene descriptions

Juancarlos Chan, Paul W. Sternberg, Stacia R. Engel, 2019 .

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

Hans-Michael Müller, Paul W. Sternberg, Rixin Wang, 2012, Database J. Biol. Databases Curation.

BC4GO: a full-text corpus for the BioCreative IV GO task

Zhiyong Lu, Kimberly Van Auken, Hans-Michael Müller, 2014, Database J. Biol. Databases Curation.

WormBase: a cross-species database for comparative genomics

Juancarlos Chan, Hans-Michael Müller, Paul W. Sternberg, 2003, Nucleic Acids Res..

WormBase: a comprehensive resource for nematode research

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2009, Nucleic Acids Res..

Mapping results for a set of cGAL effectors and drivers

Paul W. Sternberg, Sophie J. Walton, Han Wang, 2017, microPublication. Biology.

WormBase: better software, richer content

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2005, Nucleic Acids Res..

WormBase: a multi-species resource for nematode biology and genomics

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2004, Nucleic Acids Res..

WormBase 2014: new views of curated biology

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2013, Nucleic Acids Res..

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature

Kimberly Van Auken, Hans-Michael Müller, Paul W. Sternberg, 2018, BMC Bioinformatics.

Automatic categorization of diverse experimental information in the bioscience literature

Kimberly Van Auken, Paul W. Sternberg, Xiaodong Wang, 2012, BMC Bioinformatics.

Predicting Phenotypic Diversity and the Underlying Quantitative Molecular Transitions

Paul W. Sternberg, Anand R. Asthagiri, Claudiu A. Giurumescu, 2009, PLoS Comput. Biol..

Neuroinformatics for C. elegans: Relating Mind and Body in Wormbase

Zeynep F. Altun, Paul W. Sternberg, Lincoln Stein, 2003 .

WormBase 2012: more genomes, more data, new website

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2011, Nucleic Acids Res..

Negative regulation of signaling by the C. elegans EGF-receptor homolog LET-23

Paul W. Sternberg, Thomas R. Clandinin, Charles H. Yoon, 1996 .

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2004, Nucleic Acids Res..

Automatic document classification of biological literature

Hans-Michael Müller, Paul W. Sternberg, David Chen, 2006, BMC Bioinformatics.

Autonomous adaptive data acquisition for scanning hyperspectral imaging

Paul W. Sternberg, Liang Chen, Elizabeth A. Holman, 2020, Communications biology.

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2012, Database J. Biol. Databases Curation.

Combining text mining and author participation to improve curation at WormBase

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2019 .

Textpresso for Neuroscience: Searching the Full Text of Thousands of Neuroscience Research Papers

Hans-Michael Müller, Paul W. Sternberg, Tracy K. Teal, 2008, Neuroinformatics.

The Gene Ontology project in 2008

Giorgio Valle, Kimberly Van Auken, Paul W. Sternberg, 2007, Nucleic Acids Res..

An imaging system for standardized quantitative analysis of C. elegans behavior

Paul W. Sternberg, Zhaoyang Feng, John H. Wittig, 2004, BMC Bioinformatics.

WormBase 2007

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2007, Nucleic Acids Res..

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase

Kimberly Van Auken, Juancarlos Chan, Paul W. Sternberg, 2020, Database J. Biol. Databases Curation.

Micropublication: incentivizing community curation and placing unpublished data into the public domain

Paul W. Sternberg, Todd W. Harris, Tim Schedl, 2018, Database J. Biol. Databases Curation.

The Gene Ontology in 2010: extensions and refinements

Giorgio Valle, Juancarlos Chan, Paul W. Sternberg, 2009, Nucleic Acids Res..

Publishing Interactive Articles: Integrating Journals And Biological Databases

Juancarlos Chan, Hans-Michael Müller, Paul W. Sternberg, 2010 .

WormBase 2016: expanding to enable helminth genomic research

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2015, Nucleic Acids Res..

WormBase: new content and better access

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2006, Nucleic Acids Res..

Tissue enrichment analysis for C. elegans genomics

Juancarlos Chan, Paul W. Sternberg, Raymond Y. N. Lee, 2016, BMC Bioinformatics.

A trimmed graph visualization of ontology-based annotations

Juancarlos Chan, Paul W. Sternberg, Raymond Lee, 2017 .

Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF)

Hans-Michael Müller, Paul W. Sternberg, Perry L. Miller, 2008, Neuroinformatics.

Toward an interactive article: integrating journals and biological databases

Juancarlos Chan, Hans-Michael Müller, Paul W. Sternberg, 2010, BMC Bioinformatics.

Systems level circuit model of C. elegans undulatory locomotion: mathematical modeling and molecular genetics

Paul W. Sternberg, Jan Karbowski, Gary Schindelman, 2007, Journal of Computational Neuroscience.

Wormicloud: a new text summarization tool based on word clouds to explore the C. elegans literature

Paul W. Sternberg, Valerio Arnaboldi, Jae-Hyoung Cho, 2021, Database J. Biol. Databases Curation.

The combined action of two intercellular signaling pathways specifies three cell fates during vulval induction in C. elegans

Paul W. Sternberg, H. Horvitz, P. Sternberg, 1989, Cell.

ina-1 expression in the somatic gonad during late larval development

Paul W. Sternberg, Takao Inoue, Srimoyee Ghosh, 2016, microPublication. Biology.

RNA Pol II Accumulates at Promoters of Growth Genes During Developmental Arrest

Paul W. Sternberg, P. Sternberg, L. Baugh, 2009, Science.

A genetic pathway for the specification of the vulval cell lineages of Caenorhabditis elegans

Paul W. Sternberg, P. Sternberg, E. L. Ferguson, 1987, Nature.

The gene lin-3 encodes an inductive signal for vulval development in C. elegans

Paul W. Sternberg, R. J. Hill, P. Sternberg, 1992, Nature.

The Opisthorchis viverrini genome provides insights into life in the bile duct

Bin Tean Teh, Paul W. Sternberg, Niranjan Nagarajan, 2014, Nature Communications.

Acute carbon dioxide avoidance in Caenorhabditis elegans

Paul W. Sternberg, P. Sternberg, E. Hallem, 2008, Proceedings of the National Academy of Sciences.

Metabolomic "Dark Matter" Dependent on Peroxisomal β-Oxidation in Caenorhabditis elegans.

Paul W. Sternberg, P. Sternberg, A. Artyukhin, 2018, Journal of the American Chemical Society.

Sensitive and Precise Quantification of Insulin-Like mRNA Expression in Caenorhabditis elegans

Paul W. Sternberg, P. Sternberg, L. Baugh, 2011, PloS one.

The Draft Genome and Transcriptome of Panagrellus redivivus Are Shaped by the Harsh Demands of a Free-Living Lifestyle

Paul W. Sternberg, Liisa Heikkinen, Garry Wong, 2013, Genetics.

The versatile worm: genetic and genomic resources for Caenorhabditis elegans research

Paul W. Sternberg, Igor Antoshechkin, P. Sternberg, 2007, Nature Reviews Genetics.

Complex Orthogonal Decomposition Applied to Nematode Posturing

Paul W. Sternberg, Brian F. Feeny, Christopher J. Cronin, 2013 .

Systematic profiling of Caenorhabditis elegans locomotive behaviors reveals additional components in G-protein Gαq signaling

Paul W. Sternberg, Boanerges Aleman-Meza, Weiwei Zhong, 2013, Proceedings of the National Academy of Sciences.

Abbreviations: ModENCODE, Model Organism Database ENCyclopedia Of DNA Elements; EST, Expressed Sequence Tag; cDNA, complementary DNA; RNASeq, RNA sequencing by 2nd generation technologies; C., Caenorhabditis; INSDC, International Nucleotide Sequence Database Collaboration

Paul W. Sternberg, Paul J. Kersey, Richard Durbin, 2012 .

A Pattern of Precision

Paul W. Sternberg, P. Sternberg, 2004, Science.

Genomic-Bioinformatic Analysis of Transcripts Enriched in the Third-Stage Larva of the Parasitic Nematode Ascaris suum

Paul W. Sternberg, Robin B. Gasser, Weiwei Zhong, 2008, PLoS neglected tropical diseases.

A Modular Library of Small Molecule Signals Regulates Social Behaviors in Caenorhabditis elegans

Paul W. Sternberg, Alon Zaslaver, Arthur S. Edison, 2012, PLoS biology.

Erratum: WormBase: Network access to the genome and biology of Caenorhabditis elegans (Nucleic Acids Research (2001) vol. 29 (82-86))

Paul W. Sternberg, Jean Thierry-Mieg, Richard Durbin, 2001 .

Lateral inhibition during vulval induction in Caenorhabditis elegans

Paul W. Sternberg, P. Sternberg, 1988, Nature.

Archaerhodopsin Variants with Enhanced Voltage Sensitive Fluorescence in Mammalian and Caenorhabditis elegans Neurons

Paul W. Sternberg, Frances H. Arnold, Viviana Gradinaru, 2014, Nature Communications.

Genome Sequence of Additional Caenorhabditis species : Enhancing the Utility of C . elegans as a Model Organism

Paul W. Sternberg, Sean Eddy, R. Wilson, 2003 .

Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

Paul W. Sternberg, Ali Mortazavi, Byron J. Adams, 2015, Genome Biology.

Genome of the human hookworm Necator americanus

Paul W. Sternberg, Robin B. Gasser, Philip L. Felgner, 2014, Nature Genetics.

Alliance of Genome Resources Portal: unified model organism research platform

Anushya Muruganujan, Kimberly Van Auken, Juancarlos Chan, 2019, Nucleic Acids Res..

A polycystic kidney-disease gene homologue required for male mating behaviour in C. elegans

Paul W. Sternberg, P. Sternberg, M. Barr, 1999, Nature.

Multiple intercellular signalling systems control the development of the Caenorhabditis elegans vulva

Paul W. Sternberg, H. Horvitz, P. Sternberg, 1991, Nature.

Corpus Construction for the BioCreative IV GO Task

Zhiyong Lu, Kimberly Van Auken, Paul W. Sternberg, 2013 .

Opposing Wnt Pathways Orient Cell Polarity during Organogenesis

Paul W. Sternberg, Takao Inoue, P. Sternberg, 2008, Cell.

ScholarWorks @ UTRGV ScholarWorks @ UTRGV A Lover and a Fighter: The Genome Sequence of an A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora Entomopathogenic Nematode Heterorhabditis bacteriophora

Paul W. Sternberg, Randy Gaugler, Byron J. Adams, 2022 .

Ascaris suum draft genome

Paul W. Sternberg, Xun Xu, Robin B. Gasser, 2011, Nature.

C. elegans lin-45 raf gene participates in let-60 ras-stimulated vulval differentiation

Paul W. Sternberg, Min Han, P. Sternberg, 1993, Nature.

Pattern formation during vulval development in C. elegans

Paul W. Sternberg, H. Horvitz, P. Sternberg, 1986, Cell.

A blend of small molecules regulates both mating and development in Caenorhabditis elegans

Paul W. Sternberg, Fatma Kaplan, Arthur S. Edison, 2008, Nature.

Multilevel Modulation of a Sensory Motor Circuit during C. elegans Sleep and Arousal

Paul W. Sternberg, P. Sternberg, Julie Y. Cho, 2014, Cell.

WormBase: a modern Model Organism Information Resource

Kimberly Van Auken, Juancarlos Chan, Paul W. Sternberg, 2019, Nucleic Acids Res..

The let-23 gene necessary for Caenorhabditis elegans vulval induction encodes a tyrosine kinase of the EGF receptor subfamily

Paul W. Sternberg, P. Sternberg, J. Mendel, 1990, Nature.