Deren A. R. Eaton

发表

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

Deren A. R. Eaton, D. Eaton, 2013, bioRxiv.

ipcoal: An interactive Python package for simulating and analyzing genealogies and sequences on a species tree or network

Deren A. R. Eaton, Patrick F. McKenzie, D. Eaton, 2020, bioRxiv.

Toytree: A minimalist tree visualization and manipulation library for Python

Deren A. R. Eaton, D. Eaton, 2019, Methods in Ecology and Evolution.

Replicated radiation of a plant clade along a cloud forest archipelago

Michael J. Landis, Deren A. R. Eaton, M. Donoghue, 2022, Nature Ecology & Evolution.

Resolved phylogenetic relationships in the Ocotea complex (Supraocotea) facilitate phylogenetic classification and studies of character evolution.

Deren A. R. Eaton, M. Donoghue, L. Comita, 2021, American journal of botany.

Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum.

Michael J. Landis, Deren A. R. Eaton, M. Donoghue, 2020, Systematic biology.

Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum

Michael J. Landis, Deren A. R. Eaton, M. Donoghue, 2019, bioRxiv.

Pollinator and host sharing lead to hybridization and introgression in Panamanian free‐standing figs, but not in their pollinator wasps

Deren A. R. Eaton, C. A. Machado, T. Heath, 2022, bioRxiv.

ipyrad: Interactive assembly and analysis of RADseq datasets

Isaac Overcast, Deren A. R. Eaton, Deren A R Eaton, 2020, Bioinform..

Differences in flowering time maintain species boundaries in a continental radiation of Viburnum.

Deren A. R. Eaton, M. Donoghue, E. Edwards, 2019, American journal of botany.

Restriction‐Site‐Associated DNA Sequencing Reveals a Cryptic Viburnum Species on the North American Coastal Plain

Deren A. R. Eaton, M. Donoghue, E. Edwards, 2018, Systematic biology.

Genome-Wide Assessment of Diversity and Divergence Among Extant Galapagos Giant Tortoise Species

Deren A. R. Eaton, D. Edwards, J. Gibbs, 2018, The Journal of heredity.

Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae)

Deren A. R. Eaton, M. Donoghue, D. Daly, 2018, PloS one.

Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P. Compressa.

Deren A. R. Eaton, Z. Forsman, R. Toonen, 2017, Molecular phylogenetics and evolution.

Practical considerations for plant phylogenomics

Michael R McKain, Matthew G. Johnson, Deren A. R. Eaton, 2018, Applications in plant sciences.

Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana

Deren A. R. Eaton, Brook T. Moyers, S. Welch, 2013, Molecular ecology.

Genetic incompatibilities do not snowball in a demographic model of speciation

Deren A. R. Eaton, D. Eaton, C. A. Maya-Lastra, 2021, bioRxiv.

Comparative genomics of orobanchaceous species with different parasitic lifestyles reveals the origin and stepwise evolution of plant parasitism

Deren A. R. Eaton, Guojing Shen, Jingxiong Zhang, 2022, bioRxiv.

Estimating Waiting Distances Between Genealogy Changes under a Multi-Species Extension of the Sequentially Markov Coalescent

Deren A. R. Eaton, Patrick F. McKenzie, D. Eaton, 2022, bioRxiv.

Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos

Deren A. R. Eaton, De‐Zhu Li, D. Eaton, 2020, Systematic biology.

The potential of genome-wide RAD sequences for resolving rapid radiations: a case study in Cactaceae.

Deren A. R. Eaton, D. Zappi, D. Eaton, 2020, Molecular phylogenetics and evolution.

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

Deren A. R. Eaton, 2013, bioRxiv.

Inferring Processes of Coevolutionary Diversification in a Community of Panamanian Strangler Figs and Associated Pollinating Wasps

Deren A. R. Eaton, Jordan D. Satler, J. Nason, 2018, bioRxiv.

Inferring Processes of Coevolutionary Diversification in a Community of Panamanian Strangler Figs and Associated Pollinating Wasps

Deren A. R. Eaton, C. A. Machado, T. Heath, 2019 .

Selection on the gametophyte: Modeling alternation of generations in plants

Benjamin C. Haller, Deren A. R. Eaton, B. Ambrose, 2022, Applications in plant sciences.

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing

Deren A. R. Eaton, D. Eaton, Zhen-Hua Guo, 2013, Molecular ecology resources.

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

Deren A. R. Eaton, R. Ree, D. Eaton, 2013, Systematic biology.

Historical introgression among the American live oaks and the comparative nature of tests for introgression

Deren A. R. Eaton, J. Cavender-Bares, A. Hipp, 2015, Evolution; international journal of organic evolution.

Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): a genomic and population genetics approach

Deren A. R. Eaton, J. Cavender-Bares, A. Hipp, 2015, Molecular ecology.

A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data

Deren A. R. Eaton, J. Cavender-Bares, A. Hipp, 2014, PloS one.

Genotyping-by-sequencing as a tool to infer phylogeny and ancestral hybridization: a case study in Carex (Cyperaceae).

Deren A. R. Eaton, A. Hipp, D. Eaton, 2014, Molecular phylogenetics and evolution.

Phylogeny of Hawaiian Melicope (Rutaceae): RAD-seq Resolves Species Relationships and Reveals Ancient Introgression

Deren A. R. Eaton, W. L. Wagner, M. Appelhans, 2019, Front. Plant Sci..

Misconceptions on Missing Data in RAD‐seq Phylogenetics with a Deep‐scale Example from Flowering Plants

Deren A. R. Eaton, M. Donoghue, E. Spriggs, 2016, Systematic biology.