Achim Tresch

发表

S26.2: Using Text Mining Networks for the Context Specific Interpretation of Gene Expression Data

Christian Gieger, Daniel Hanisch, Juliane Fluck, 2004 .

Genome-wide Generalized Additive Models We Derived a Peak Caller Based on Genogam with Performance Matching State-of-the-art Methods. Moreover, Genogam Provides Significance Testing for Differential Occupancy With

Achim Tresch, Matthias Schmid, Daniel Schulz, 2022 .

A Bayesian Network View on Nested Effects Models

Holger Fröhlich, Achim Tresch, Cordula Zeller, 2008, EURASIP J. Bioinform. Syst. Biol..

Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data

Achim Tresch, Kemal Akman, Thomas Haaf, 2014, Bioinform..

Selective Phenotyping, Entropy Reduction, and the Mastermind game

Achim Tresch, Julien Gagneur, Markus C. Elze, 2011, BMC Bioinformatics.

Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions

Nico Scherf, Achim Tresch, Ingo Röder, 2015, Bioinform..

Nested effects models for learning signaling networks from perturbation data

Achim Tresch, Holger Fröhlich, Tim Beissbarth, 2009, Biometrical journal. Biometrische Zeitschrift.

Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer

Achim Tresch, Holger Sültmann, Markus Ruschhaupt, 2007, Bioinform..

Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data

Holger Fröhlich, Achim Tresch, Erfan Younesi, 2012, Bioinform..

Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm

Achim Tresch, Anna K Rieger, Alexander Engelhardt, 2017, Human Heredity.

Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA)

Achim Tresch, Daniel Schulz, Dietmar E. Martin, 2012, Bioinform..

Hidden Markov Models with Generalised Emission Distribution for the Analysis of High-Dimensional, Non-Euclidean Data

Achim Tresch, Torsten Hothorn, Master Thesis, 2011 .

Fast and efficient dynamic nested effects models

Holger Fröhlich, Achim Tresch, Paurush Praveen, 2011, Bioinform..

Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images

Achim Tresch, Henrik Failmezger, Martin Hülskamp, 2013, PLoS Comput. Biol..

The genomic STate ANnotation package

Achim Tresch, Julien Gagneur, Benedikt Zacher, 2016 .

GenoGAM: Genome-wide generalized additive models for ChIP-seq analysis

Achim Tresch, Matthias Schmid, Daniel Schulz, 2016, bioRxiv.

Analysis of Affymetrix ChIP-chip data using starr and R/Bioconductor.

Achim Tresch, Benedikt Zacher, Phillipp Torkler, 2011, Cold Spring Harbor protocols.

MowJoe: a method for automated-high throughput dissected leaf phenotyping

Achim Tresch, Maria Cartolano, Henrik Failmezger, 2018, Plant Methods.

Learning gene network structure from time laps cell imaging in RNAi Knock downs

Holger Fröhlich, Achim Tresch, Henrik Failmezger, 2013, Bioinform..

Analyzing gene perturbation screens with nested effects models in R and bioconductor

Holger Fröhlich, Achim Tresch, Rainer Spang, 2008, Bioinform..

Unsupervised automated high throughput phenotyping of RNAi time-lapse movies

Holger Fröhlich, Achim Tresch, Henrik Failmezger, 2013, BMC Bioinformatics.

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

Achim Tresch, Pei Fen Kuan, Benedikt Zacher, 2009, BMC Bioinformatics.

Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction

Achim Tresch, Niko Beerenwinkel, Rainer Spang, 2014, Bioinform..

Automatic post-picking using MAPPOS improves particle image detection from Cryo-EM micrographs

Achim Tresch, Ramin Norousi, Stephan Wickles, 2011, Journal of structural biology.

Classification across gene expression microarray studies

Achim Tresch, Markus Ruschhaupt, Andreas Buness, 2009, BMC Bioinformatics.

Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects

Achim Tresch, Tim Beißbarth, Holger Sültmann, 2007, J. Comput. Biol..

Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging

Achim Tresch, Timm Schroeder, Henrik Failmezger, 2018, Bioinform..

MC EMiNEM Maps the Interaction Landscape of the Mediator

Holger Fröhlich, Achim Tresch, Dietmar E. Martin, 2012, PLoS Comput. Biol..

QuantProReloaded: quantitative analysis of microspot immunoassays

Achim Tresch, Tim Beißbarth, Stefan Wiemann, 2010, Bioinform..

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

Achim Tresch, Lars Dölken, Daniel Schulz, 2011, Molecular systems biology.

Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors

Achim Tresch, Henrik Failmezger, Max Endele, 2016, Scientific Reports.

Learning Monotonic Genotype-Phenotype Maps

Achim Tresch, Niko Beerenwinkel, Patrick Knupfer, 2011, Statistical applications in genetics and molecular biology.

Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle

Achim Tresch, Julien Gagneur, Benedikt Zacher, 2014, Molecular systems biology.

STrand-specific ANnotation of genomic data

Achim Tresch, Julien Gagneur, J. Gagneur, 2014 .

The functional cancer map: A systems-level synopsis of genetic deregulation in cancer

Rainer König, Achim Tresch, Thorsten Maass, 2011, BMC Medical Genomics.

Periodic mRNA synthesis and degradation co‐operate during cell cycle gene expression

Achim Tresch, Patrick Cramer, P. Cramer, 2014, Molecular systems biology.

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation

Achim Tresch, Daniel Schulz, Patrick Cramer, 2012, Genome research.

Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models

Achim Tresch, Rainer Spang, Marcel O. Vlad, 2009, Proceedings of the National Academy of Sciences.

Statistical Applications in Genetics and Molecular Biology

Achim Tresch, Niko Beerenwinkel, Patrick Knupfer, 2010 .

Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model

Achim Tresch, Julien Gagneur, Don Poron, 2015, Nucleic acids research.

Structure Learning in Nested Effects Models

Achim Tresch, Florian Markowetz, F. Markowetz, 2007, Statistical applications in genetics and molecular biology.

Spatial, temporal and interindividual epigenetic variation of functionally important DNA methylation patterns

Achim Tresch, Thomas Haaf, K. Frauenknecht, 2010, Nucleic acids research.

Quantitative protein microarrays for time‐resolved measurements of protein phosphorylation

Achim Tresch, Ursula Klingmüller, Annemarie Poustka, 2008, Proteomics.

Selection of Higher Order Regression Models in the Analysis of Multi-Factorial Transcription Data

Achim Tresch, Ulrich Mansmann, Thorsten Buch, 2014, PloS one.

Heterochrony underpins natural variation in Cardamine hirsuta leaf form

Achim Tresch, Maria Cartolano, Miltos Tsiantis, 2015, Proceedings of the National Academy of Sciences.