Neerja Karnani

Gene, Environment and Methylation (GEM): a tool suite to efficiently navigate large scale epigenome wide association studies and integrate genotype and interaction between genotype and environment

Chee Keong Kwoh, Hong Pan, Joanna D. Holbrook, 2016, BMC Bioinformatics.

Improving mass-univariate analysis of neuroimaging data by modelling important unknown covariates: Application to Epigenome-Wide Association Studies

Anqi Qiu, Changqing Wang, Michael J. Meaney, 2018, NeuroImage.

Temporal profile of replication of human chromosomes.

Srinka Ghosh, Philipp Kapranov, Thomas R Gingeras, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Optimizing drug combinations against multiple myeloma using a quadratic phenotypic optimization platform (QPOP)

Chih-Ming Ho, Dean Ho, Aleidy Silva, 2018, Science Translational Medicine.

Genomic Study of Replication Initiation in Human Chromosomes Reveals the Influence of Transcription Regulation and Chromatin Structure on Origin Selection

Neerja Karnani, Ankit Malhotra, Christopher M. Taylor, 2010, Molecular biology of the cell.

Microarray analysis of DNA replication timing.

Neerja Karnani, Christopher M. Taylor, N. Karnani, 2009, Methods in molecular biology.

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas.

Neerja Karnani, Ankit Malhotra, A. Malhotra, 2007, Genome research.

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription.

Stefan Bekiranov, Neerja Karnani, N. Karnani, 2011, Genome research.

The effect of the intra-S-phase checkpoint on origins of replication in human cells.

Neerja Karnani, Anindya Dutta, N. Karnani, 2011, Genes & development.