Shinji Soga

Identification of the Druggable Concavity in Homology Models Using the PLB Index

Hiroki Shirai, Noriaki Hirayama, Shinji Soga, 2007, J. Chem. Inf. Model..

Use of Amino Acid Composition to Predict Ligand-Binding Sites

Hiroki Shirai, Noriaki Hirayama, Shinji Soga, 2007, J. Chem. Inf. Model..

Chemocavity: Specific Concavity in Protein Reserved for the Binding of Biologically Functional Small Molecules

Hiroki Shirai, Noriaki Hirayama, Shinji Soga, 2008, J. Chem. Inf. Model..

Affinity Improvement of a Therapeutic Antibody by Structure-Based Computational Design: Generation of Electrostatic Interactions in the Transition State Stabilizes the Antibody-Antigen Complex

Kouhei Tsumoto, Satoru Nagatoishi, Masato Kiyoshi, 2014, PloS one.

Use of amino acid composition to predict epitope residues of individual antibodies.

Hiroki Shirai, Noriaki Hirayama, Shinji Soga, 2010, Protein engineering, design & selection : PEDS.