Sunhwan Jo

发表

Leveraging the Information from Markov State Models To Improve the Convergence of Umbrella Sampling Simulations.

Sunhwan Jo, Donghyuk Suh, Ziwei He, 2016, The journal of physical chemistry. B.

Accelerating Orthogonal Space Sampling with Replica Exchange with Solute Tempering (REST2) through a Generic Implementation in NAMD

Wei Jiang, Sunhwan Jo, 2016 .

CHARMM-GUI Ligand Binder for Absolute Binding Free Energy Calculations and Its Application

Wei Jiang, Sunhwan Jo, Hui Sun Lee, 2013, J. Chem. Inf. Model..

Application of Binding Free Energy Calculations to Prediction of Binding Modes and Affinities of MDM2 and MDMX Inhibitors

Sunhwan Jo, Hui Sun Lee, Wonpil Im, 2012, J. Chem. Inf. Model..

Glycan reader: Automated sugar identification and simulation preparation for carbohydrates and glycoproteins

Alexander D. MacKerell, Sunhwan Jo, Wonpil Im, 2011, J. Comput. Chem..

Web interface for brownian dynamics simulation of ion transport and its applications to beta‐barrel pores

Sunhwan Jo, Benoît Roux, Wonpil Im, 2012, J. Comput. Chem..

PBEQ-Solver for online visualization of electrostatic potential of biomolecules

Sunhwan Jo, Benoît Roux, Wonpil Im, 2008, Nucleic Acids Res..

Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems.

Klaus Schulten, James C. Phillips, Sunhwan Jo, 2017, Journal of chemical theory and computation.

CHARMM-GUI PACE CG Builder for Solution, Micelle, and Bilayer Coarse-Grained Simulations

Klaus Schulten, Xi Cheng, Wei Han, 2014, J. Chem. Inf. Model..

CHARMM-GUI Micelle Builder for Pure/Mixed Micelle and Protein/Micelle Complex Systems

Sunhwan Jo, Hui Sun Lee, Wonpil Im, 2013, J. Chem. Inf. Model..

CHARMM‐GUI: A web‐based graphical user interface for CHARMM

Taehoon Kim, Sunhwan Jo, Wonpil Im, 2008, J. Comput. Chem..

CHARMM‐GUI 10 years for biomolecular modeling and simulation

Alexander D. MacKerell, Xi Cheng, Sunhwan Jo, 2017, J. Comput. Chem..

CHARMM‐GUI ligand reader and modeler for CHARMM force field generation of small molecules

Charles L. Brooks, Sunhwan Jo, Jumin Lee, 2017, J. Comput. Chem..

Glycan fragment database: a database of PDB-based glycan 3D structures

Sunhwan Jo, Wonpil Im, W. Im, 2012, Nucleic Acids Res..

Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank

Sunhwan Jo, Jumin Lee, Hui Sun Lee, 2017, Bioinform..

Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model

Ivet Bahar, Sunhwan Jo, Benoît Roux, 2014, PLoS Comput. Biol..

CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates

Sunhwan Jo, Jooyoung Lee, Jumin Lee, 2019, Glycobiology.

Restricted N-glycan Conformational Space in the PDB and Its Implication in Glycan Structure Modeling

Sunhwan Jo, Jeffrey Skolnick, Hui Sun Lee, 2013, PLoS Comput. Biol..

CHARMM‐GUI Membrane Builder toward realistic biological membrane simulations

Sunhwan Jo, Xi Cheng, Jumin Lee, 2014, J. Comput. Chem..

GS-align for glycan structure alignment and similarity measurement

Sunhwan Jo, Jooyoung Lee, Jeffrey Skolnick, 2015, Bioinform..

String method for Protein-Protein Binding Free Energy Calculations.

Wei Jiang, Sunhwan Jo, Donghyuk Suh, 2019, Journal of chemical theory and computation.

NMR-based simulation studies of Pf1 coat protein in explicit membranes.

Sunhwan Jo, Wonpil Im, Xi Cheng, 2013, Biophysical journal.

Molecular dynamics and NMR spectroscopy studies of E. coli lipopolysaccharide structure and dynamics.

Sunhwan Jo, Olof Engström, Wonpil Im, 2013, Biophysical journal.

Efficient Determination of Relative Entropy Using Combined Temperature and Hamiltonian Replica-Exchange Molecular Dynamics.

Sunhwan Jo, Christophe Chipot, Benoît Roux, 2015, Journal of chemical theory and computation.

An ensemble dynamics approach to decipher solid-state NMR observables of membrane proteins.

Sunhwan Jo, Wonpil Im, Taehoon Kim, 2012, Biochimica et biophysica acta.

Cholesterol flip-flop: insights from free energy simulation studies.

Sunhwan Jo, Wonpil Im, Huan Rui, 2010, The journal of physical chemistry. B.

CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans.

Sunhwan Jo, Wonpil Im, Jumin Lee, 2018, Journal of chemical theory and computation.

Molecular dynamics simulations of the Cx26 hemichannel: insights into voltage-dependent loop-gating.

Sunhwan Jo, Benoît Roux, Jeffery B. Klauda, 2012, Biophysical journal.

Transmembrane helix orientation and dynamics: insights from ensemble dynamics with solid-state NMR observables.

Sunhwan Jo, Wonpil Im, W. Im, 2011, Biophysical journal.

CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

Alexander D. MacKerell, Sunhwan Jo, Benoît Roux, 2014, Advances in protein chemistry and structural biology.

Solid-state NMR ensemble dynamics as a mediator between experiment and simulation.

Sunhwan Jo, Wonpil Im, Taehoon Kim, 2011, Biophysical journal.

Preferred conformations of N-glycan core pentasaccharide in solution and in glycoproteins.

Sunhwan Jo, Wonpil Im, Yifei Qi, 2015, Glycobiology.