Daniel Glez-Peña

发表

Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine

Florentino Fernández Riverola, Osvaldo Graña-Castro, Hugo López-Fernández, 2019, PACBB.

Fuzzy Patterns and GCS Networks to Clustering Gene Expression Data

Juan M. Corchado, Florentino Fernández Riverola, Daniel Glez-Peña, 2009, Fuzzy Systems in Bioinformatics and Computational Biology.

GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components

Daniel Glez-Peña, Florentino Fdez-Riverola, Hugo López-Fernández, 2018, PloS one.

CHAPTER 5:Statistics, Data Mining and Modeling

Daniel Glez-Peña, Hugo López-Fernández, Miguel Reboiro-Jato, 2020 .

Deep Neural Networks approaches for detecting and classifying colorectal polyps

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2021, Neurocomputing.

Using CBR as Design Methodology for Developing Adaptable Decision Support Systems

Daniel Glez-Peña, Florentino Fdez-Riverola, José Ramon Méndez, 2011 .

Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments

Florentino Fernández Riverola, Daniel Glez-Peña, Osvaldo Graña, 2011, PACBB.

Medical-Miner: Integración de conocimiento textual explícito en técnicas de minería de datos para la creación de herramientas traslacionales en medicina

Florentino Fernández Riverola, Manuel J. Maña López, Daniel Glez-Peña, 2010, Proces. del Leng. Natural.

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis

Florentino Fernández Riverola, Daniel Glez-Peña, David G. Pisano, 2009, Nucleic Acids Res..

genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data

Florentino Fernández Riverola, Daniel Glez-Peña, Fernando Díaz, 2013, Expert Syst. Appl..

Deep Learning Techniques for Real Time Computer-Aided Diagnosis in Colorectal Cancer

Daniel Glez-Peña, Hugo López-Fernández, Alba Nogueira-Rodríguez, 2019, DCAI.

Multiple-Microarray Analysis and Internet Gathering Information with Application for Aiding Medical Diagnosis in Cancer Research

Manuel Glez Bedia, Florentino Fernández Riverola, Daniel Glez-Peña, 2008, IWPACBB.

Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects

Martín Pérez-Pérez, Anália Lourenço, Florentino Fernández Riverola, 2015, Comput. Methods Programs Biomed..

A Comparative Impact Study of Attribute Selection Techniques on Naïve Bayes Spam Filters

Miguel Rocha, Florentino Fernández Riverola, Daniel Glez-Peña, 2008, ICDM.

Analyzing the Performance of Spam Filtering Methods When Dimensionality of Input Vector Changes

Florentino Fernández Riverola, Daniel Glez-Peña, José Ramon Méndez, 2007, MLDM.

Using Variable Precision Rough Set for Selection and Classification of Biological Knowledge Integrated in DNA Gene Expression

Florentino Fernández Riverola, Silvana Gómez Meire, Daniel Glez-Peña, 2012, Journal of integrative bioinformatics.

Developing New Services for the Automotive Industry using Matrix

Florentino Fernández Riverola, Daniel Glez-Peña, Silvia Alén, 2007, WEBIST.

Using Fuzzy Patterns for Gene Selection and Data Reduction on Microarray Data

Juan M. Corchado, Florentino Fernández Riverola, Fernando Díaz, 2006, IDEAL.

A framework for the development of Biomedical Text Mining software tools

Eugénio C. Ferreira, Miguel Rocha, Anália Lourenço, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

A Multi-Agent System Approach for Algorithm Parameter Tuning

Daniel Glez-Peña, Fernando Díaz, Rosalía Laza, 2009, PAAMS.

Managing irrelevant knowledge in CBR models for unsolicited e-mail classification

Juan M. Corchado, Florentino Fernández Riverola, Fernando Díaz, 2009, Expert Syst. Appl..

Medical-Miner at TREC 2011 Medical Records Track

Florentino Fernández Riverola, Manuel J. Maña López, Daniel Glez-Peña, 2011, TREC.

A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2014, Int. J. Data Min. Bioinform..

Applying Text Mining to Search for Protein Patterns

María Lourdes Borrajo Diz, Daniel Glez-Peña, Eva Lorenzo Iglesias, 2009, IWANN.

Integrating Heterogeneous Data and Applications with Distributed-AIBENCH

Florentino Fernández Riverola, Daniel Glez-Peña, Julia Glez-Dopazo, 2008, 2008 Eighth International Conference on Hybrid Intelligent Systems.

A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets

Florentino Fernández Riverola, Daniel Glez-Peña, Fernando Díaz, 2010, IWPACBB.

S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2017, PACBB.

Beds and Bits: The Challenge of Translational Bioinformatics

Daniel Glez-Peña, Carmen M. Redondo Marey, Gonzalo Gómez-López, 2008, IWPACBB.

S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2018, Comput. Methods Programs Biomed..

Incorporating biological knowledge to microarray data classification through genomic data fusion

Florentino Fernández Riverola, Daniel Glez-Peña, Fernando Díaz, 2010, 2010 13th International Conference on Information Fusion.

Current Efforts to Integrate Biological Pathway Information

Florentino Fernández Riverola, Daniel Glez-Peña, David G. Pisano, 2009, IWANN.

AIBench: A rapid application development framework for translational research in biomedicine

Miguel Rocha, Florentino Fernández Riverola, Daniel Glez-Peña, 2010, Comput. Methods Programs Biomed..

PileLine: a toolbox to handle genome position information in next-generation sequencing studies

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2011, BMC Bioinformatics.

@Note: A workbench for Biomedical Text Mining

Eugénio C. Ferreira, Miguel Rocha, Anália Lourenço, 2009, J. Biomed. Informatics.

Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2018, Bioinform..

ALTER: program-oriented conversion of DNA and protein alignments

Florentino Fernández Riverola, Daniel Glez-Peña, David Posada, 2010, Nucleic Acids Res..

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2011, Nucleic Acids Res..

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research

Juan M. Corchado, Florentino Fernández Riverola, Daniel Glez-Peña, 2009, BMC Bioinformatics.

An Evolutionary Approach for Sample-Based Clustering on Microarray Data

Juan M. Corchado, Florentino Fernández Riverola, Daniel Glez-Peña, 2009, IWANN.

BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments

Florentino Fernández Riverola, Daniel Glez-Peña, Manuel de Buenaga Rodríguez, 2013, Comput. Methods Programs Biomed..

A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2012, Int. J. Data Min. Bioinform..

A JAVA application framework for scientific software development

Florentino Fernández Riverola, Daniel Glez-Peña, José Ramon Méndez, 2012, Softw. Pract. Exp..

Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines

Osvaldo Graña-Castro, Hugo López-Fernández, Daniel Glez-Peña, 2020, PACBB.

LA-iMageS: a software for elemental distribution bioimaging using LA–ICP–MS data

Daniel Glez-Peña, Florentino Fdez-Riverola, Hugo López-Fernández, 2016, Journal of Cheminformatics.

Web scraping technologies in an API world

Anália Lourenço, Florentino Fernández Riverola, Daniel Glez-Peña, 2014, Briefings Bioinform..

Abstract A22: PanDrugsDB: Identifying druggable genetic dependencies for personalized cancer therapy

Elena Piñeiro-Yáñez, Fatima Al-Shahrour, Alfonso Valencia, 2015 .

Relaxing Feature Selection in Spam Filtering by Using Case-Based Reasoning Systems

Juan M. Corchado, Florentino Fernández Riverola, Daniel Glez-Peña, 2007, EPIA Workshops.

Applying GCS Networks to Fuzzy Discretized Microarray Data for Tumour Diagnosis

Juan M. Corchado, Florentino Fernández Riverola, Daniel Glez-Peña, 2006, IDEAL.

Resumen de Tesis: Model for explicit biological knowledge integration in DNA microarray gene expression classification

Daniel Glez-Peña, 2010, Inteligencia Artif..

A platform for the selection of genes in DNA microarraydata using evolutionary algorithms

Miguel Rocha, Florentino Fernández Riverola, Daniel Glez-Peña, 2007, GECCO '07.

Assessing Classification Accuracy in the Revision Stage of a CBR Spam Filtering System

Juan M. Corchado, Florentino Fernández Riverola, Fernando Díaz, 2007, ICCBR.

Building Proteomics Applications with the AIBench Application Framework

Florentino Fernández Riverola, Daniel Glez-Peña, José Ramon Méndez, 2011, PACBB.

A Workflow for the Application of Biclustering to Mass Spectrometry Data

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2013, PACBB.

Perceptions of the use of intelligent information access systems in university level active learning activities among teachers of biomedical subjects

Florentino Fernández Riverola, Manuel J. Maña López, Daniel Glez-Peña, 2017, Int. J. Medical Informatics.

An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets

Florentino Fernández Riverola, Fernando Díaz, Daniel Glez-Peña, 2010, IWPACBB.

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

Eugénio C. Ferreira, Luis Mateus Rocha, Miguel Rocha, 2009, IWANN.

Rapid development of proteomic applications with the AIBench framework

Florentino Fernández Riverola, Daniel Glez-Peña, José Ramon Méndez, 2011, J. Integr. Bioinform..

Agent-Based Spatiotemporal Simulation of Biomolecular Systems within the Open Source MASON Framework

Daniel Glez-Peña, Florentino Fdez-Riverola, Nuno F Azevedo, 2015, BioMed research international.

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2016, PACBB.

geneSetFinder: A Multiagent Architecture for Gathering Biological Information

Florentino Fernández Riverola, Daniel Glez-Peña, Rosalía Laza, 2009, PAAMS.

PathJam: a new service for integrating biological pathway information

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2010, J. Integr. Bioinform..

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data

Florentino Fernández Riverola, Fernando Díaz, Daniel Glez-Peña, 2009, BMC Bioinformatics.

A novel ensemble of classifiers that use biological relevant gene sets for microarray classification

Florentino Fernández Riverola, Fernando Díaz, Daniel Glez-Peña, 2014, Appl. Soft Comput..

Using inductive learning to assess compound feed production in cooperative poultry farms

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2011, Expert Syst. Appl..

Implementing effective machine learning-based workflows for the analysis of mass spectrometry data

Daniel Glez-Peña, Florentino Fdez-Riverola, Miguel Reboiro-Jato, 2016 .

Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2015, BMC Bioinformatics.

Marky: A Lightweight Web Tracking Tool for Document Annotation

Martín Pérez-Pérez, Anália Lourenço, Florentino Fernández Riverola, 2014, PACBB.

A case-based reasoning system for aiding detection and classification of nosocomial infections

Florentino Fernández Riverola, Daniel Glez-Peña, Reyes Pavón, 2016, Decis. Support Syst..

Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory

Florentino Fernández Riverola, Daniel Glez-Peña, Diego Calvo-Dmgz, 2012, PACBB.

Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench

Anália Lourenço, Florentino Fernández Riverola, Daniel Glez-Peña, 2015, Comput. Methods Programs Biomed..

RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2017, Comput. Methods Programs Biomed..

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis

Florentino Fernández Riverola, Daniel Glez-Peña, Osvaldo Graña, 2015, PACBB.

BioDR: Semantic indexing networks for biomedical document retrieval

Eugénio C. Ferreira, Luis Mateus Rocha, Miguel Rocha, 2010, Expert Syst. Appl..

BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data

Anália Lourenço, Florentino Fernández Riverola, Daniel Glez-Peña, 2014, PACBB.

The Impact of Noise in Spam Filtering: A Case Study

Florentino Fernández Riverola, Daniel Glez-Peña, José Ramon Méndez, 2008, ICDM.

The artificial intelligence workbench: a retrospective review

Daniel Glez-Peña, Florentino Fdez-Riverola, Hugo López-Fernández, 2016 .

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2011, PACBB.

Classification of MedLine Documents Using MeSH Terms

María Lourdes Borrajo Diz, Daniel Glez-Peña, Eva Lorenzo Iglesias, 2009, IWANN.

Multi-agent System for Mass Spectrometry Analysis

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2010, PAAMS.

PathAgent: Multi-agent System for Updated Pathway Information Integration

Florentino Fernández Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, 2010, PAAMS.

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies

Florentino Fernández Riverola, Daniel Glez-Peña, Hugo López-Fernández, 2012, PACBB.

Lessons learned developing GUI in bioinformatics software: from end-user applications to resources for programmers

Daniel Glez-Peña, Florentino Fdez-Riverola, Hugo López-Fernández, 2018 .

Compi: a framework for portable and reproducible pipelines

Osvaldo Graña-Castro, Daniel Glez-Peña, Hugo López-Fernández, 2021, PeerJ Comput. Sci..

Real-time polyp detection model using convolutional neural networks

Daniel Glez-Peña, Florentino Fdez-Riverola, Hugo López-Fernández, 2021, Neural Computing and Applications.

A novel 18O inverse labeling‐based workflow for accurate bottom‐up mass spectrometry quantification of proteins separated by gel electrophoresis

Daniel Glez-Peña, Florentino Fdez-Riverola, Miguel Reboiro-Jato, 2010, Electrophoresis.