Nicola De Maio

Bayesian reconstruction of transmission within outbreaks using genomic variants

Nicola De Maio, Colin J. Worby, Daniel J. Wilson, 2017, bioRxiv.

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Sebastián Duchêne, Graham Jones, Igor Siveroni, 2018, bioRxiv.

SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent

Nicola De Maio, Daniel J. Wilson, Chieh-Hsi Wu, 2016, PLoS Comput. Biol..

A phylogenetic approach for weighting genetic sequences

Jakub Truszkowski, Nicola De Maio, Alexander V. Alekseyenko, 2021, BMC Bioinform..

PoMo: An Allele Frequency-based Approach for Species Tree Estimation

Nicola De Maio, Dominik Schrempf, Carolin Kosiol, 2015 .

SimBac: simulation of whole bacterial genomes with homologous recombination

Nicola De Maio, Daniel J. Wilson, Xavier Didelot, 2016, Microbial genomics.