Zuoshuang Xiang

发表

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions

Yongqun He, Junguk Hur, Arzucan Özgür, 2015, Journal of Biomedical Semantics.

OAE: The Ontology of Adverse Events

Cui Tao, Xiaoqin Zhang, Yu Lin, 2014, J. Biomed. Semant..

Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis

Yu Lin, Yongqun He, Zuoshuang Xiang, 2011, ICBO.

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events

Rebecca Racz, Yu Lin, Qian Zhu, 2016, Journal of Biomedical Semantics.

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering

Yongqun He, Zuoshuang Xiang, Zhaohui S. Qin, 2007, Bioinform..

Victors: a web-based knowledge base of virulence factors in human and animal pathogens

Xing-Ming Zhao, Bin Zhao, Xiaoqin Zhang, 2018, Nucleic Acids Res..

OntoFox and its Application in Development of Brucellosis Ontology

Yu Lin, Yongqun He, Zuoshuang Xiang, 2011, ICBO.

Ontology representation and ANOVA analysis of vaccine protection investigation

Bjoern Peters, Alan Ruttenberg, James Malone, 2010 .

HINO: BFO-aligned ontology representation of human molecular interactions and pathways

Yongqun He, Zuoshuang Xiang, 2013, ICBO.

OntoFox: web-based support for ontology reuse

Ryan R Brinkman, Alan Ruttenberg, Yongqun He, 2010, BMC Research Notes.

Applications of the vaccine ontology (vo) in vaccine data integration and computer-assisted automated reasoning

Zuoshuang Xiang, Yongqun Oliver He Yu Lin, 2013 .

Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis

Yu Lin, Yongqun He, Zuoshuang Xiang, 2014, ICBO.

Ontodog: a web-based ontology community view generation tool

Yongqun He, Christian J. Stoeckert, Zuoshuang Xiang, 2014, Bioinform..

Ontobee: A Linked Data Server and Browser for Ontology Terms

Alan Ruttenberg, Chris Mungall, Yongqun He, 2011, ICBO.

AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events

Werner Ceusters, Yongqun He, Zuoshuang Xiang, 2011, ICBO.

VO: Vaccine Ontology

Bjoern Peters, Barry Smith, Alan Ruttenberg, 2009 .

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability

Yu Lin, Yongqun He, James A. Overton, 2018, Journal of Biomedical Semantics.

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining

Yongqun He, Junguk Hur, Arzucan Özgür, 2012, Journal of Biomedical Semantics.

Ontology-based representation and analysis of host-Brucella interactions

Yu Lin, Yongqun He, Zuoshuang Xiang, 2015, Journal of Biomedical Semantics.

Ontorat web server for automatic generation and annotations of new ontology terms

Yu Lin, Yongqun He, Zuoshuang Xiang, 2012, ICBO.

MiniTUBA: a Web-Based Dynamic Bayesian Network Analysis System

Yongqun He, Zuoshuang Xiang, Y. He, 2010 .

VIOLIN: vaccine investigation and online information network

Fang Chen, Andrew P. Hodges, Yongqun He, 2007, Nucleic Acids Res..

Open Access TECHNICAL NOTE

Alan Ruttenberg, Yongqun He, Zuoshuang Xiang, 2010 .

Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics

Alexander D. Diehl, James Malone, Helen E. Parkinson, 2011, ICBO.

CLO: The cell line ontology

Yue Liu, David J. States, Yu Lin, 2014, Journal of Biomedical Semantics.

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology

Dragomir R. Radev, Yongqun He, Arzucan Özgür, 2011, J. Biomed. Semant..

Improvement of PubMed Literature Searching using Biomedical Ontology

Yongqun He, Zuoshuang Xiang, Y. He, 2009 .

Ontodog: A Web-based Ontology Community View Generator

Yongqun He, Christian J. Stoeckert, Zuoshuang Xiang, 2012, ICBO.

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

Bin Zhao, Yue Liu, Yu Lin, 2016, Nucleic Acids Res..

Updates on the web-based VIOLIN vaccine database and analysis system

Rebecca Racz, Yu Lin, Yongqun He, 2013, Nucleic Acids Res..

94: Medical inference by network integration of temporal data using dynamic Bayesian analysis

Zuoshuang Xiang, Yulei He, Xiaoming Bi, 2007 .

Protegen: a web-based protective antigen database and analysis system

Yongqun He, Zuoshuang Xiang, Brian Yang, 2010, Nucleic Acids Res..

HINO: a BFO-aligned ontology representing human molecular interactions and pathways pdf

Yongqun He, Zuoshuang Xiang, Y. He, 2013, ArXiv.

Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates

Yu Lin, Yongqun He, Zuoshuang Xiang, 2013, BMC Bioinformatics.

BBP: Brucella genome annotation with literature mining and curation

Yongqun He, Wenjie Zheng, Zuoshuang Xiang, 2006, BMC Bioinformatics.

miniTUBA: medical inference by network integration of temporal data using Bayesian analysis

Peter J. Woolf, Yongqun He, Zuoshuang Xiang, 2007, Bioinform..

A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks

Yongqun He, Zuoshuang Xiang, Zhaohui S. Qin, 2013, BMC Systems Biology.

Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion

Barry Smith, Yongqun He, Zuoshuang Xiang, 2016, ICBO/BioCreative.

Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology

Yu Lin, Yongqun He, Zuoshuang Xiang, 2011, J. Biomed. Semant..

Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks

Dragomir R. Radev, Yongqun He, Junguk Hur, 2016, ICBO/BioCreative.

Databases and in silico tools for vaccine design.

Yongqun He, Zuoshuang Xiang, Y. He, 2013, Methods in molecular biology.

Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology

Yongqun He, Zuoshuang Xiang, Y. He, 2013, BMC Bioinformatics.

DNAVaxDB: the first web-based DNA vaccine database and its data analysis

Rebecca Racz, Yongqun He, Zuoshuang Xiang, 2014, BMC Bioinformatics.

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns

Yu Lin, Yongqun He, Zuoshuang Xiang, 2015, J. Biomed. Semant..

NoteOntoFox : web-based support for ontology reuse

Ryan R Brinkman, Alan Ruttenberg, Yongqun He, 2010 .

Pathobiology and management of laboratory rodents administered CDC category A agents.

Yongqun He, Zuoshuang Xiang, L. Colby, 2007, Comparative medicine.

Literature-Based Discovery of IFN-γ and Vaccine-Mediated Gene Interaction Networks

Dragomir R. Radev, Yongqun He, Zuoshuang Xiang, 2010, Journal of biomedicine & biotechnology.

Vaxign: The First Web-Based Vaccine Design Program for Reverse Vaccinology and Applications for Vaccine Development

Yongqun He, Zuoshuang Xiang, Harry L. T. Mobley, 2010, Journal of biomedicine & biotechnology.

Vaxjo: A Web-Based Vaccine Adjuvant Database and Its Application for Analysis of Vaccine Adjuvants and Their Uses in Vaccine Development

Yongqun He, Zuoshuang Xiang, Samantha Sayers, 2012, Journal of biomedicine & biotechnology.

Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN

Yongqun He, Zuoshuang Xiang, Y. He, 2010, Immunome research.

Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network

Yongqun He, Junguk Hur, Zuoshuang Xiang, 2011, BMC Immunology.

Bioinformatics analysis of bacterial protective antigens in manually curated Protegen database

Yongqun He, Zuoshuang Xiang, Y. He, 2012 .

Proinflammatory Caspase-2-Mediated Macrophage Cell Death Induced by a Rough Attenuated Brucella suis Strain

Debashis Ghosh, Yongqun He, Zuoshuang Xiang, 2011, Infection and Immunity.

Bayesian Network Expansion Identifies New ROS and Biofilm Regulators

Andrew P. Hodges, Yongqun He, Zuoshuang Xiang, 2010, PloS one.