Yoshihide Hayashizaki

发表

Wavelet profiles: their application in Oryza sativa DNA sequence analysis

Shoshi Kikuchi, Nobuyuki Kawagashira, Yasuhiro Ohtomo, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

The RIKEN integrated database of mammals

Satoshi Takahashi, Riichiro Mizoguchi, Tetsuro Toyoda, 2010, Nucleic Acids Res..

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

Yoshihide Hayashizaki, Ronald Bontrop, Alistair R. R. Forrest, 2018, Scientific Data.

assay information of the mouse qualitycontrol samples for HeliScopeCAGE

Mariko Okada, Hans Clevers, Kim M. Summers, 2017 .

MOIRAI: a compact workflow system for CAGE analysis

Carsten O. Daub, Akira Hasegawa, Piero Carninci, 2014, BMC Bioinformatics.

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

Carsten O. Daub, Yoshihide Hayashizaki, Sean M. Grimmond, 2009, Bioinform..

READ: Practical Analysis System of Mouse Transcriptome with the FANTOM Database

Yoshihide Hayashizaki, Hidemasa Bono, Itoshi Nikaido, 2001 .

Practical Organization and Functional Annotation of RIKEN cDNA Microarray

Yoshihide Hayashizaki, Hidemasa Bono, Takeya Kasukawa, 2000 .

Construction of reliable protein-protein interaction networks with a new interaction generality measure

Yoshihide Hayashizaki, Rintaro Saito, Harukazu Suzuki, 2003, Bioinform..

LOCATE: a mouse protein subcellular localization database

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2005, Nucleic Acids Res..

Edesign: Eprobe and primer design tool for PCR experiments

Yoshihide Hayashizaki, Michiel J. L. de Hoon, Matthias Harbers, 2016 .

MIACA – Minimum Information About a Cellular Assay: Standardized description of cell-based functional assay projects

Oliver Hofmann, Chris F. Taylor, Rolf Apweiler, 2013 .

Data-driven normalization strategies for high-throughput quantitative RT-PCR

John Quackenbush, Yoshihide Hayashizaki, Jessica C. Mar, 2009, BMC Bioinformatics.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Interaction Generality, a Measurement to Assess the Reliability of a Protein-Protein Interaction

Yoshihide Hayashizaki, Rintaro Saito, Masaru Tomita, 2002 .

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Finn Drabløs, David J. Arenillas, Piero Carninci, 2016, Nucleic Acids Res..

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

Masaru Tomita, Kenichi Higo, Shoshi Kikuchi, 2005, Bioinform..

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2005, Nucleic Acids Res..

FANTOM+: The Interface for Functional Annotation of Mouse cDNA

Toshihisa Okido, Kiyoshi Yoshida, Yoshihide Hayashizaki, 2000 .

The DT40 web site: sampling and connecting the genes of a B cell line

Piero Carninci, Yoshihide Hayashizaki, Hiroshi Arakawa, 2002, Nucleic Acids Res..

BMC Bioinformatics BioMed Central Methodology article Large-scale clustering of CAGE tag expression data

Takio Kurita, Martin C. Frith, Kazuro Shimokawa, 2007 .

Integrated analysis of the genome and the transcriptome by FANTOM

Yoshihide Hayashizaki, Shintaro Katayama, Mutsumi Kanamori, 2004, Briefings Bioinform..

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Teruyoshi Hishiki, Katsuhiko Murakami, Yoshihiro Kawahara, 2007, Nucleic Acids Res..

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2016, Database J. Biol. Databases Curation.

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

Yoshihide Hayashizaki, Hideya Kawaji, Marina Lizio, 2014, Nature Biotechnology.

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

Liang Yang, Vladimir B. Bajic, Jun Kawai, 2006, BMC Bioinformatics.

Representing Functional Annotations of Mouse cDNA Sequences in XML

Hideo Matsuda, Yoshihide Hayashizaki, Hidemasa Bono, 2000 .

RNAdb—a comprehensive mammalian noncoding RNA database

Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick, 2004, Nucleic Acids Res..

[Future views on genome network projects].

Yoshihide Hayashizaki, 2004, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

READ: RIKEN Expression Array Database

Yoshihide Hayashizaki, Hidemasa Bono, Takeya Kasukawa, 2002, Nucleic Acids Res..

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases

Yoshihide Hayashizaki, Alistair R. R. Forrest, Sean M. Grimmond, 2006, BMC Bioinformatics.

Construction and Application of Mouse Full-length cDNA Database

Yoshihide Hayashizaki, Hideaki Konno, Toshinori Endo, 1999 .

Automated cDNA Information System for Large Scale cDNA Project

Yoshihide Hayashizaki, Hideaki Konno, Kazuhiro Shibata, 1998 .

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

Piero Carninci, Yoshihide Hayashizaki, Robin Andersson, 2016, Database J. Biol. Databases Curation.

MaXML: mouse annotation XML

Hideo Matsuda, Yoshihide Hayashizaki, Hidemasa Bono, 2003, Silico Biol..

Assessment of Redundancy and Full-Length Rate of Full-Length Enriched cDNA Libraries

Piero Carninci, Yoshihide Hayashizaki, Hideaki Konno, 2000 .

SDRF2GRAPH – a visualization tool of a spreadsheet-based description of experimental processes

Carsten O. Daub, Yoshihide Hayashizaki, Hideya Kawaji, 2009, BMC Bioinformatics.

sample information of the human samples

Mariko Okada, Hans Clevers, Kim M. Summers, 2017 .

Solution structure of the PCI domain

Yoshihide Hayashizaki, Takanori Kigawa, Shigeyuki Yokoyama, 2004 .

Large-scale collection and characterization of promoters of human and mouse genes

Alexander E. Kel, Kenta Nakai, Toshihisa Takagi, 2004, Silico Biol..

TagDust—a program to eliminate artifacts from next generation sequencing data

Carsten O. Daub, Yoshihide Hayashizaki, Timo Lassmann, 2009, Bioinform..

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response

Carsten O. Daub, Mariko Okada, Piero Carninci, 2015, PLoS Comput. Biol..

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

Akira Hasegawa, Piero Carninci, Yoshihide Hayashizaki, 2018, Nucleic Acids Res..

SAMStat: monitoring biases in next generation sequencing data

Carsten O. Daub, Yoshihide Hayashizaki, Timo Lassmann, 2010, Bioinform..

Optimization of turn-back primers in isothermal amplification

Carsten O. Daub, Yoshihide Hayashizaki, Yuki Kawai, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

An Automatic Image Analysis System for RLGS Films

Yoshihide Hayashizaki, Isao Tanihata, Yuichi Sugahara, 1997 .

EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes

Yoshihide Hayashizaki, Itoshi Nikaido, Yasushi Okazaki, 2004, Nucleic Acids Res..

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, 2010, Nucleic Acids Res..

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

Norio Kobayashi, Piero Carninci, Yoshihide Hayashizaki, 2020, Nucleic Acids Res..

Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell

Yoshihide Hayashizaki, Takahiro Suzuki, Hiromi Nishida, 2006, Chromosome Research.

Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2004, Physiological genomics.

The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.

Yoshihide Hayashizaki, Rintaro Saito, Christian Schönbach, 2003, Genome research.

Asb4, Ata3, and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray.

Jun Kawai, Yoshihide Hayashizaki, Tomohiro Kono, 2002, Biochemical and biophysical research communications.

Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2003, DNA research : an international journal for rapid publication of reports on genes and genomes.

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2009, Genome research.

Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells

Yoshiyuki Sakaki, Tetsuro Toyoda, Yoshihide Hayashizaki, 2009, BMC Genomics.

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, bioRxiv.

Monitoring transcription initiation activities in rat and dog

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, Scientific Data.

Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin

Yoshihide Hayashizaki, Yasuhiro Tomaru, Y. Hayashizaki, 2011, RNA biology.

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Terry Gaasterland, Yoshihide Hayashizaki, Mihaela Zavolan, 2003, Genome research.

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, 2015, PloS one.

Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers.

Piero Carninci, Yoshihide Hayashizaki, Robin Andersson, 2016, Cancer research.

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, Scientific Data.

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.

Jun Kawai, Yoshihide Hayashizaki, Yuki Hasegawa, 2010, Molecular immunology.

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Masaru Tomita, Jun Kawai, Piero Carninci, 2010, BMC Genomics.

Simplified ontologies allowing comparison of developmental mammalian gene expression

Oliver Hofmann, Piero Carninci, Yoshihide Hayashizaki, 2007, Genome Biology.

The mouse secretome: functional classification of the proteins secreted into the extracellular environment.

Zheng Yuan, Yoshihide Hayashizaki, Hidemasa Bono, 2003, Genome research.

A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs.

Shoshi Kikuchi, Jun Kawai, Piero Carninci, 2002, Genome research.

CDS annotation in full-length cDNA sequence.

Yoshihide Hayashizaki, Takeya Kasukawa, Rintaro Saito, 2003, Genome research.

The Abundance of Short Proteins in the Mammalian Proteome

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response

Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, 2015, PLoS Comput. Biol..

Concise prediction models of anticancer efficacy of 8 drugs using expression data from 12 selected genes

Shinji Tanaka, Yoshihide Hayashizaki, Yasushi Okazaki, 2004, International journal of cancer.

Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling.

Yoshihide Hayashizaki, Tomohiro Kono, Hidemasa Bono, 2003, Genome research.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Development and evaluation of an automated annotation pipeline and cDNA annotation system.

Hideo Matsuda, John Quackenbush, Yoshihide Hayashizaki, 2003, Genome research.

Interaction generality, a measurement to assess the reliability of a protein-protein interaction.

Yoshihide Hayashizaki, Rintaro Saito, Y. Hayashizaki, 2002, Nucleic acids research.

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2014, Genome research.

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation

Sebastian Schmeier, Yoshihide Hayashizaki, Ulf Schaefer, 2009, BMC Genomics.

FANTOM5 CAGE profiles of human and mouse samples

Hiroshi Tanaka, Geoffrey J Faulkner, Sarah Klein, 2017, Scientific Data.

Insights into social insects from the genome of the honeybee Apis mellifera

Ying Wang, Michal Linial, Andrew G. Clark, 2006, Nature.

Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data.

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2004, Molecular biology and evolution.

Genome-wide analysis of cancer/testis gene expression

Oliver Hofmann, C. V. Jongeneel, Piero Carninci, 2008, Proceedings of the National Academy of Sciences.

Rapid single-nucleotide polymorphism detection of cytochrome P450 (CYP2C9) and vitamin K epoxide reductase (VKORC1) genes for the warfarin dose adjustment by the SMart-amplification process version 2.

Yoshihide Hayashizaki, Mia Wadelius, Masahiko Kurabayashi, 2009, Clinical chemistry.

Two-step cleavage of hairpin RNA with 5' overhangs by human DICER

Yoshihide Hayashizaki, Joe Chiba, Y. Hayashizaki, 2011, BMC Molecular Biology.

A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.

Yoshihide Hayashizaki, Satoshi Yamashita, Haruo Okado, 2009, Developmental cell.

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation

Yoshihide Hayashizaki, Erik Arner, Atsutaka Kubosaki, 2009, Genome Biology.

Restriction landmark genomic scanning method and its various applications

Jun Kawai, Yoshihide Hayashizaki, Yasushi Okazaki, 1993, Electrophoresis.

Differential Use of Signal Peptides and Membrane Domains Is a Common Occurrence in the Protein Output of Transcriptional Units

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Spatial patterns of gene expression in the olfactory bulb.

Yoshihide Hayashizaki, Terence P Speed, Yasushi Okazaki, 2004, Proceedings of the National Academy of Sciences of the United States of America.

A comprehensive search for HNF-3alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis.

Yoshihide Hayashizaki, Yasuhiro Tomaru, Y. Hayashizaki, 2003, Biochemical and biophysical research communications.

Antisense transcripts with rice full-length cDNAs

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2003, Genome Biology.

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

Geoffrey J Faulkner, Piero Carninci, Yoshihide Hayashizaki, 2017, PLoS genetics.

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

S. Q. Xie, Piero Carninci, Yoshihide Hayashizaki, 2015, Molecular systems biology.

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

Piero Carninci, Yoshihide Hayashizaki, Martin C Frith, 2014, BMC Genomics.

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Vladimir B. Bajic, Jun Kawai, Piero Carninci, 2010, PloS one.

Additional data file 5

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2003 .

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.

Piero Carninci, Yoshihide Hayashizaki, Akira Hasegawa, 2008, BioTechniques.

Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B

Jun Kawai, Yoshihide Hayashizaki, Hideaki Fujita, 2004, Journal of Cell Science.

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes.

Piero Carninci, Yoshihide Hayashizaki, Reed George, 2002, Genome research.

Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.

Yoshihide Hayashizaki, Kuniya Abe, Y. Hayashizaki, 2005, Genome research.

Noncoding RNA transcription beyond annotated genes.

Piero Carninci, Yoshihide Hayashizaki, Piero Carninci, 2007, Current opinion in genetics & development.

Sharing genomes: an integrated approach to funding, managing and distributing genomic clone resources

Yoshihide Hayashizaki, Y. Hayashizaki, Tom Weaver, 2004, Nature Reviews Genetics.

Subcellular Localization of Mammalian Type II Membrane Proteins

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Traffic.

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2018, Open Biology.

A Simple Physical Model Predicts Small Exon Length Variations

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Rapid and cost-effective SNP detection method: application of SmartAmp2 to pharmacogenomics research.

Yoshihide Hayashizaki, Alexander Lezhava, Y. Hayashizaki, 2009, Pharmacogenomics.

Alternate transcription of the Toll-like receptor signaling cascade

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Genome Biology.

Exploration of Small RNAs

Yoshihide Hayashizaki, Hideya Kawaji, Y. Hayashizaki, 2008, PLoS genetics.

Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray

Shoshi Kikuchi, Yoshiaki Nagamura, Mayu Yamamoto, 2007, PloS one.

Metagenomic Diagnosis of Bacterial Infections

Jun Kawai, Yoshihide Hayashizaki, Toshihiro Horii, 2008, Emerging infectious diseases.

Computational analysis of full-length mouse cDNAs compared with human genome sequences

Jun Kawai, Yoshihide Hayashizaki, Tetsuya Saito, 2001, Mammalian Genome.

Comparative analysis of expression of histone H2a genes in mouse

Yoshihide Hayashizaki, Takahiro Suzuki, Hiromi Nishida, 2005, BMC Genomics.

Tail variation of the folding primer affects the SmartAmp2 process differently.

Yoshihide Hayashizaki, Yasumasa Kimura, Alexander Lezhava, 2009, Biochemical and biophysical research communications.

A new approach to the distribution and storage of genetic resources

Jun Kawai, Yoshihide Hayashizaki, J. Kawai, 2004, Nature Reviews Genetics.

Multifaceted mammalian transcriptome.

Piero Carninci, Yoshihide Hayashizaki, Jun Yasuda, 2008, Current opinion in cell biology.

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics

Vladimir B. Bajic, Sebastian Schmeier, Piero Carninci, 2015, Nucleic acids research.

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

Carsten O. Daub, Philipp Kapranov, Thomas R. Gingeras, 2010, Nature Methods.

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

Geoffrey J Faulkner, Jun Kawai, Piero Carninci, 2006, Genome Biology.

Genome Network and FANTOM3: Assessing the Complexity of the Transcriptome

Piero Carninci, Yoshihide Hayashizaki, Piero Carninci, 2006, PLoS genetics.

Chromatin conformation signatures of cellular differentiation

Mathieu Blanchette, Yoshihide Hayashizaki, Josée Dostie, 2009, Genome Biology.

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.

Masaru Tomita, Piero Carninci, Yoshihide Hayashizaki, 2002, Genome research.

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

Boris Lenhard, Piero Carninci, Yoshihide Hayashizaki, 2015, Nucleic acids research.

Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality.

Wolfgang Huber, Hans Lehrach, Piero Carninci, 2007, Genomics.

Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases.

Yoshihide Hayashizaki, Hideya Kawaji, Yasuhiro Murakawa, 2016, Trends in genetics : TIG.

The complexity of the mammalian transcriptome

Piero Carninci, Yoshihide Hayashizaki, Albin Sandelin, 2006, The Journal of physiology.

Heterotachy in Mammalian Promoter Evolution

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Aptamer-dependent full-length cDNA synthesis by overlap extension PCR.

Yoshihide Hayashizaki, Matthias Harbers, Y. Hayashizaki, 2004, BioTechniques.

Absolute expression values for mouse transcripts: re‐annotation of the READ expression database by the use of CAGE and EST sequence tags

Kazuro Shimokawa, Jun Kawai, Piero Carninci, 2004, FEBS letters.

A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes

Piero Carninci, Yoshihide Hayashizaki, Patrick McConnell, 2006, Proceedings of the National Academy of Sciences.

Evolutionary turnover of mammalian transcription start sites.

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Genome research.

Solution structure of a BolA‐like protein from Mus musculus

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2004, Protein science : a publication of the Protein Society.

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology

Yoshihide Hayashizaki, Masayoshi Itoh, Takahiro Arakawa, 2007, Nature Methods.

PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease

Piero Carninci, Yoshihide Hayashizaki, Joost Boele, 2014, Proceedings of the National Academy of Sciences.

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Geoffrey J Faulkner, Piero Carninci, Yoshihide Hayashizaki, 2008, Genomics.

Genome-wide end-sequenced BAC resources for the NOD/MrkTac☆ and NOD/ShiLtJ☆☆ mouse genomes

Yoshihide Hayashizaki, David J. Adams, Thomas M. Keane, 2010, Genomics.

[FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones].

Yoshihide Hayashizaki, Takeya Kasukawa, Hidemasa Bono, 2003, Seikagaku. The Journal of Japanese Biochemical Society.

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images

Yanhui Hu, Lukas Wagner, David E Hill, 2017 .

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, EBioMedicine.

Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: causes of signal variation and false positive signals.

Yoshihide Hayashizaki, Thomas R Gingeras, Yuki Hasegawa, 2007, Genomics.

A predictive computational framework for direct reprogramming between human cell types

Yoshihide Hayashizaki, Hai Fang, Enrico Petretto, 2016, Nature Genetics.

Pseudo–Messenger RNA: Phantoms of the Transcriptome

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution

Kazuo Shinozaki, Piero Carninci, Yoshihide Hayashizaki, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Mapping of 19032 mouse cDNAs on mouse chromosomes

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2002, Journal of Structural and Functional Genomics.

Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.

Yoshihide Hayashizaki, Itaru Yamanaka, Naoki Osato, 2003, Genome research.

Structure of the oncoprotein gankyrin in complex with S6 ATPase of the 26S proteasome.

Yoshihide Hayashizaki, Masami Horikoshi, Shigeyuki Yokoyama, 2007, Structure.

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5′/3′ arm variation including concomitant cleavage and polyuridylation patterns

Carsten O. Daub, Yoshihide Hayashizaki, A. Maxwell Burroughs, 2011, Nucleic acids research.

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis.

Yoshihide Hayashizaki, Hideya Kawaji, Takeya Kasukawa, 2004, Genomics.

Genomic Instability of iPSCs: Challenges Towards Their Clinical Applications

Yoshihide Hayashizaki, Yasuhiro Murakawa, Y. Hayashizaki, 2016, Stem Cell Reviews and Reports.

Dynamic usage of transcription start sites within core promoters

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Genome Biology.

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

Boris Lenhard, Piero Carninci, Yoshihide Hayashizaki, 2007, Nature Reviews Genetics.

Rapid Detection of Epidermal Growth Factor Receptor Mutations in Lung Cancer by the SMart-Amplification Process

Yasushi Ichikawa, Yoshihide Hayashizaki, Takahiro Arakawa, 2007, Clinical Cancer Research.

RIKEN mouse genome encyclopedia

Yoshihide Hayashizaki, Y. Hayashizaki, 2002, Mechanisms of Ageing and Development.

Expression analysis of genes responsible for serotonin signaling in the brain

Yoshihide Hayashizaki, Hiroaki Nitta, Mutsumi Kanamori, 2005, Neurobiology of Disease.

A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription

Masaru Tomita, Kenichi Higo, Shoshi Kikuchi, 2003, FEBS letters.

Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium

Boris Lenhard, Martin C. Frith, Jun Kawai, 2005 .

George MW, Gene ER. Insights into social insects from the genome of the honeybee Apis mellifera. Nature

Ying Wang, Michal Linial, Peer Bork, 2006 .