Dirk Gevers

发表

Bioinformatics for the Human Microbiome Project

Mihai Pop, Curtis Huttenhower, Patrick D. Schloss, 2012, PLoS Comput. Biol..

MetaRef: a pan-genomic database for comparative and community microbial genomics

Arthur Brady, Curtis Huttenhower, Owen White, 2013, Nucleic Acids Res..

Microbial Co-occurrence Relationships in the Human Microbiome

Curtis Huttenhower, Karoline Faust, Jeroen Raes, 2012, PLoS Comput. Biol..

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

Bernard Henrissat, Brandi L. Cantarel, Curtis Huttenhower, 2012, PLoS Comput. Biol..

Mobile genes in the human microbiome are structured from global to individual scales

A. K. Singh, Stacy D. Jupiter, Ashutosh Kumar Singh, 2016, Nature.

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

Jenny Sauk, Guoyan Zhao, Ramnik J. Xavier, 2015, Cell.

Complex host genetics influence the microbiome in inflammatory bowel disease

Dan Knights, Hailiang Huang, Jenny Sauk, 2014, Genome Medicine.

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

Curtis Huttenhower, Nicola Segata, Timothy L. Tickle, 2014, The ISME Journal.

The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.

Tommi Vatanen, Harri Lähdesmäki, Jorma Ilonen, 2015, Cell host & microbe.

Stepping stones towards a new prokaryotic taxonomy

Peter Dawyndt, Jean Swings, Peter Vandamme, 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.

Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study.

Jenny Sauk, Eric J Alm, Dirk Gevers, 2014, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Katherine H. Huang, Jonathan Livny, Jacques Izard, 2012, Genome Biology.

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

Eric S. Lander, Tommi Vatanen, Curtis Huttenhower, 2015, Science Translational Medicine.

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

Aleksandar Milosavljevic, Cristian Coarfa, Curtis Huttenhower, 2012, PloS one.

Diversity Analysis of Dairy and Nondairy Lactococcus lactis Isolates, Using a Novel Multilocus Sequence Analysis Scheme and (GTG)5-PCR Fingerprinting

Johan E T van Hylckama Vlieg, Jean Swings, Jeroen Hugenholtz, 2007, Applied and Environmental Microbiology.

Metagenomic biomarker discovery and explanation

Levi Waldron, Curtis Huttenhower, Nicola Segata, 2011 .

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott, 2011, PloS one.

Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine

Noam Shental, Carrie M. Mosher, Iris Barshack, 2017, Science.

Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease

Eric J. Alm, David B. Schauer, Ramnik J. Xavier, 2012, PloS one.

The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters

Shital Patel, Kjersti Aagaard, James Versalovic, 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

Bo Wang, Michael A Kennedy, Curtis Huttenhower, 2013, Microbiome.

Identifying personal microbiomes using metagenomic codes

Katherine H. Huang, Curtis Huttenhower, Eric A Franzosa, 2015, Proceedings of the National Academy of Sciences.

A Microbiome Foundation for the Study of Crohn's Disease.

Rob Knight, Dan Knights, Dirk Gevers, 2017, Cell host & microbe.

ConStrains identifies microbial strains in metagenomic datasets

Rob Knight, Dirk Gevers, Mikael Knip, 2015, Nature Biotechnology.

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

Levi Waldron, Curtis Huttenhower, Nicola Segata, 2012, Genome Biology.

Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development

Thomas Abeel, Jeremy Zucker, Alex L. B. Leach, 2011, PLoS genetics.

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

Tommi Vatanen, Raivo Kolde, Harri Lähdesmäki, 2016, Cell.

Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.

Adam Baldwin, Peter Vandamme, Dirk Gevers, 2009, International journal of systematic and evolutionary microbiology.

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

Katherine H. Huang, Eric J Alm, Brian Cleary, 2015, Nature Biotechnology.

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

Morris A. Swertz, Jingyuan Fu, Yurii S. Aulchenko, 2016, Science.

Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment

John D. Spengler, Curtis Huttenhower, Afrah Shafquat, 2016, mSystems.

Advancing the Microbiome Research Community

Rob Knight, Dan Knights, J. Gregory Caporaso, 2014, Cell.

Opinion: Re-evaluating prokaryotic species.

Tom Coenye, Jean Swings, Edward J Feil, 2005, Nature reviews. Microbiology.