Shalin H Naik

Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments

Luyi Tian, Matthew E Ritchie, Matthew E. Ritchie, 2019, Nature Methods.

Self-Organizing Nebulous Growths for Robust and Incremental Data Visualization.

Wei Wang, Saman Halgamuge, Shalin H Naik, 2020, IEEE transactions on neural networks and learning systems.

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

Luyi Tian, Matthew E Ritchie, Matthew E. Ritchie, 2018, PLoS Comput. Biol..

Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo

Melanie Bahlo, Jong-Young Kwak, Donald Metcalf, 2007, Nature Immunology.

Determining lineage pathways from cellular barcoding experiments.

Ton N Schumacher, Shalin H Naik, Rob J de Boer, 2014, Cell reports.