Zlatko Trajanoski

发表

Integrating Biomolecular and Clinical Data for Cancer Research: Concepts and Challenges

Pornpimol Charoentong, Hubert Hackl, Bernhard Mlecnik, 2012 .

Insights into global mechanisms and disease by gene expression profiling.

Hubert Hackl, Zlatko Trajanoski, Fátima Sánchez-Cabo, 2011, Methods in molecular biology.

ArrayNorm: comprehensive normalization and analysis of microarray data

Gerhard G. Thallinger, Hubert Hackl, Zlatko Trajanoski, 2004, Bioinform..

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

Karl Mechtler, Gerhard G. Thallinger, Zlatko Trajanoski, 2007, BMC Bioinformatics.

NeoFuse: predicting fusion neoantigens from RNA sequencing data

Zlatko Trajanoski, Georgios Fotakis, Dietmar Rieder, 2019, Bioinform..

MASPECTRAS 2: An integration and analysis platform for proteomic data

Zlatko Trajanoski, Jürgen Hartler, Uwe Rix, 2010, Proteomics.

Genesis: cluster analysis of microarray data

John Quackenbush, Zlatko Trajanoski, Alexander Sturn, 2002, Bioinform..

Information technology solutions for integration of biomolecular and clinical data in the identification of new cancer biomarkers and targets for therapy.

Pornpimol Charoentong, Bernhard Mlecnik, Gabriela Bindea, 2010, Pharmacology & therapeutics.

ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster

Zlatko Trajanoski, Gernot Stocker, Dietmar Rieder, 2004, Bioinform..

Client-Server environment for high-performance gene expression data analysis

Bernhard Mlecnik, Zlatko Trajanoski, Thomas Truskaller, 2003, Bioinform..

Information management systems for pharmacogenomics.

Zlatko Trajanoski, Slave Trajanoski, Gerhard G Thallinger, 2002, Pharmacogenomics.

YPL.db: the Yeast Protein Localization database

Gerhard G. Thallinger, Zlatko Trajanoski, Matthew E. Crawford, 2002, Nucleic Acids Res..

Mathematical models for translational and clinical oncology

Pornpimol Charoentong, Hubert Hackl, Zlatko Trajanoski, 2013, Journal of Clinical Bioinformatics.

Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data

Claudio Cobelli, Gianna Toffolo, Zlatko Trajanoski, 2005, Bioinform..

A quantization method based on threshold optimization for microarray short time series

Claudio Cobelli, Gianna Toffolo, Zlatko Trajanoski, 2005, BMC Bioinformatics.

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Pornpimol Charoentong, Hubert Hackl, Bernhard Mlecnik, 2009, Bioinform..

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data

Zlatko Trajanoski, Georgios Fotakis, Dietmar Rieder, 2020, bioRxiv.

MARS: Microarray analysis, retrieval, and storage system

Hubert Hackl, Zlatko Trajanoski, Michael Maurer, 2005, BMC Bioinformatics.

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data

Zlatko Trajanoski, Stephan Pabinger, Andreas Dander, 2014, Database J. Biol. Databases Curation.

Genome-scale model management and comparison.

Zlatko Trajanoski, Stephan Pabinger, Z. Trajanoski, 2013, Methods in molecular biology.

TAMEE: data management and analysis for tissue microarrays

Martina Uray, Gerhard G. Thallinger, Zlatko Trajanoski, 2007, BMC Bioinformatics.

GPViz: dynamic visualization of genomic regions and variants affecting protein domains

Hubert Hackl, Zlatko Trajanoski, René Snajder, 2013, Bioinform..

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases

Zlatko Trajanoski, Stephan Pabinger, Dominik Schweiger, 2014, BMC Bioinformatics.

JAVA-based microarray image analysis tool

Hubert Hackl, Zlatko Trajanoski, Gerhard G. Thallinger, 2001 .

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages

Matthias Baldauf, Zlatko Trajanoski, Michael Sperk, 2014, BMC Bioinformatics.

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis

Zlatko Trajanoski, Johannes Rainer, Fátima Sánchez-Cabo, 2006, Nucleic Acids Res..

A 192 channel PC-based intraoperative cardiac activation mapping system

Zlatko Trajanoski, K. K. Steinbach, G. Schreier, 1993, Proceedings of the 15th Annual International Conference of the IEEE Engineering in Medicine and Biology Societ.

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis

Gabriela Bindea, Zlatko Trajanoski, James G. McNally, 2009, BMC Bioinformatics.

Systems for the management of pharmacogenomic information.

Zlatko Trajanoski, Michael Maurer, Alexander Sturn, 2005, Methods in molecular biology.

A fully Bayesian model to cluster gene-expression profiles

Olaf Wolkenhauer, Zlatko Trajanoski, Simon J. Hubbard, 2005, ECCB/JBI.

MEMOSys: Bioinformatics platform for genome-scale metabolic models

Jens Nielsen, Zlatko Trajanoski, Stephan Pabinger, 2011, BMC Systems Biology.

Final Report, Bioinformatics Integration Network III

Zlatko Trajanoski, Arndt von Haeseler, Christian Baumgartner, 2012 .

Java editor for biological pathways

Hubert Hackl, Zlatko Trajanoski, Michael Maurer, 2003, Bioinform..

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy

Pornpimol Charoentong, Zlatko Trajanoski, Elias Tappeiner, 2017, Bioinform..

A survey of tools for variant analysis of next-generation genome sequencing data

Michael R. Speicher, Zlatko Trajanoski, Michael Sperk, 2013, Briefings Bioinform..

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways

Hubert Hackl, Bernhard Mlecnik, Zlatko Trajanoski, 2005, Nucleic Acids Res..

Client Server Solution for Large Scale Gene Expression Data Mining

Bernhard Mlecnik, Zlatko Trajanoski, Johannes Rainer, 2002 .

Neural Predictive Controller for Closed-Loop Control of Glucose Using the Subcutaneous Route: A Simulation Study

Zlatko Trajanoski, Paul Wach, W. Regittnig, 1997 .

QPCR: Application for real-time PCR data management and analysis

Gerhard G. Thallinger, Zlatko Trajanoski, Stephan Pabinger, 2009, BMC Bioinformatics.

Neural Predictive Controller for Closed-Loop Control of Glucose Using the Subcutaneous Route: A Simulation Study

Zlatko Trajanoski, Paul Wach, W. Regittnig, 1997 .

meRanTK: methylated RNA analysis ToolKit

Zlatko Trajanoski, Dietmar Rieder, Elisabeth Kugler, 2016, Bioinform..

A Graphical Users Interface to Normalize Microarray Data

Kwang-Hyun Cho, Olaf Wolkenhauer, Zlatko Trajanoski, 2003 .

Second Year Report, Bioinformatics Integration Network III

Zlatko Trajanoski, Arndt von Haeseler, Christian Baumgartner, 2008 .

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

Zlatko Trajanoski, Georgios Fotakis, Dietmar Rieder, 2020, bioRxiv.

Artificial intelligence and cancer

Anne E Carpenter, Olga G. Troyanskaya, Anne E. Carpenter, 2020, Nature Cancer.

GOLD.db: genomics of lipid-associated disorders database

Diego Miranda-Saavedra, Zlatko Trajanoski, Jürgen Hartler, 2004, BMC Genomics.

Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade

Zlatko Trajanoski, Clemens Mayer, Mirjana Efremova, 2016, bioRxiv.

Analyzing Gene-Expression Data with Bayesian Networks

Zlatko Trajanoski, Graz, Kurzfassung, 2002 .

Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories

Zlatko Trajanoski, Marcel Scheideler, James G. McNally, 2013, Cellular and Molecular Life Sciences.

miR-22 and miR-29a Are Members of the Androgen Receptor Cistrome Modulating LAMC1 and Mcl-1 in Prostate Cancer.

Zlatko Trajanoski, Christian Fuchsberger, Helmut Klocker, 2015, Molecular endocrinology.

Biomolecular network reconstruction identifies T-cell homing factors associated with survival in colorectal cancer.

Zlatko Trajanoski, Patrick Bruneval, Marie Tosolini, 2010, Gastroenterology.

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Yu Wang, Zlatko Trajanoski, Clemens Mayer, 2017, Genome Medicine.

Blood glucose forecasting in patients with insulin dependent diabetes mellitus with the Universal Process Modeling Algorithm

Zlatko Trajanoski, Peter Kotanko, Paul Wach, 1992, 1992 14th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

In situ cytotoxic and memory T cells predict outcome in patients with early-stage colorectal cancer.

Zlatko Trajanoski, Kurt Zatloukal, Patrick Bruneval, 2009, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

The Yeast Protein Localization Database

Gerhard G. Thallinger, Zlatko Trajanoski, Klaus Natter, 2003 .

Generic Features of Tertiary Chromatin Structure as Detected in Natural Chromosomes

Zlatko Trajanoski, James G. McNally, Dietmar Rieder, 2004, Molecular and Cellular Biology.

Transcription factories

Zlatko Trajanoski, James G. McNally, Dietmar Rieder, 2012, Front. Gene..

Arxes: retrotransposed genes required for adipogenesis

Frank Eisenhaber, Zlatko Trajanoski, Marcel Scheideler, 2010, Nucleic acids research.

Mass producible miniaturized flow through a device with a biosensor array

Gerald Urban, Zlatko Trajanoski, Isabella Moser, 1997 .

Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens.

Zlatko Trajanoski, Giulio Superti-Furga, Florian P Breitwieser, 2011, Journal of proteomics.

SIMPLEX: Cloud-Enabled Pipeline for the Comprehensive Analysis of Exome Sequencing Data

Zlatko Trajanoski, Stephan Pabinger, Gernot Stocker, 2012, PloS one.

SeqBench: Integrated solution for the management and analysis of exome sequencing data

Zlatko Trajanoski, Michael Sperk, Stephan Pabinger, 2013, BMC Research Notes.

Mutations in ROGDI Cause Kohlschütter-Tönz Syndrome.

Zlatko Trajanoski, Stephan Pabinger, Christof von Kalle, 2012, American journal of human genetics.

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution

Zlatko Trajanoski, Martin Löwer, Mirjana Efremova, 2018, Nature Communications.

Identification of small gains and losses in single cells after whole genome amplification on tiling oligo arrays

Michael R. Speicher, Zlatko Trajanoski, Maria Fischer, 2009, Nucleic acids research.

molecular mechanisms in tumor-immune cells interaction.

Zlatko Trajanoski, Fátima Sánchez-Cabo, Jérôme Galon, 2011 .

Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ

Frank Eisenhaber, Zlatko Trajanoski, Fatima Sanchez-Cabo, 2010, Cellular and Molecular Life Sciences.

Assessment of transcapillary glucose exchange in human skeletal muscle and adipose tissue.

Zlatko Trajanoski, Paul Wach, Gerald Sendlhofer, 2003, American journal of physiology. Endocrinology and metabolism.

Analysis of DNA microarray data.

Olaf Wolkenhauer, Zlatko Trajanoski, Alexander Sturn, 2004, Current topics in medicinal chemistry.

Identification of evolutionarily conserved genetic regulators of cellular aging

Zlatko Trajanoski, Regina Brunauer, Günter Lepperdinger, 2010, Aging cell.

Molecular processes during fat cell development revealed by gene expression profiling and functional annotation

Sun Tian, John Quackenbush, Frank Eisenhaber, 2005, Genome Biology.

Histopathologic-based prognostic factors of colorectal cancers are associated with the state of the local immune reaction.

Zlatko Trajanoski, Patrick Bruneval, Marie Tosolini, 2011, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

New trends in bioinformatics: from genome sequence to personalized medicine

Zlatko Trajanoski, Alexander Sturn, Robert Molidor, 2003, Experimental Gerontology.