Bashar Ibrahim

发表

Multi-scale Modelling of Computers Made from Excitable Chemical Droplets

Andrew Adamatzky, Peter Dittrich, Gerd Gruenert, 2013, Int. J. Unconv. Comput..

Effects of small particle numbers on long-term behaviour in discrete biochemical systems

Tomas Veloz, Peter Dittrich, Bashar Ibrahim, 2014, Bioinform..

Rule-based spatial modeling with diffusing, geometrically constrained molecules

Thomas Hinze, Peter Dittrich, Thorsten Lenser, 2010, BMC Bioinformatics.

Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps

Thomas Hinze, Peter Dittrich, Thorsten Lenser, 2008, EvoBIO.

Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis

Peter Dittrich, Stefan Schuster, Manja Marz, 2019, Viruses.

Spatial Rule-Based Modeling: A Method and Its Application to the Human Mitotic Kinetochore

Bashar Ibrahim, Gerd Gruenert, Richard Henze, 2013, Cells.

Understanding Networks of Computing Chemical Droplet Neurons Based on Information Flow

Peter Dittrich, Gerd Gruenert, Gabi Escuela, 2015, Int. J. Neural Syst..

Structural analysis of in silico mutant experiments of human inner-kinetochore structure

Peter Dittrich, Bashar Ibrahim, Richard Henze, 2015, Biosyst..

In silico study of kinetochore control, amplification, and inhibition effects in MCC assembly

Peter Dittrich, Bashar Ibrahim, Eberhard Schmitt, 2009, Biosyst..

Global importance of RNA secondary structures in protein-coding sequences

Manja Marz, Bashar Ibrahim, Markus Fricke, 2018, Bioinform..

Combining evolution and self-organization to find natural Boolean representations in unconventional computational media

Peter Dittrich, Matthew D Egbert, Gerd Gruenert, 2019, Biosyst..

Trends in mathematical modeling of host–pathogen interactions

Bashar Ibrahim, Jan Ewald, Ravindra Garde, 2019, Cellular and Molecular Life Sciences.

Spatial Rule-Based Simulations: The SRSim Software.

Peter Dittrich, Bashar Ibrahim, Richard Henze, 2019, Methods in molecular biology.

Towards Evolutionary Network Reconstruction Tools for Systems Biology

Thomas Hinze, Peter Dittrich, Thorsten Lenser, 2007, EvoBIO.

Mathematical analysis and modeling of DNA segregation mechanisms.

Bashar Ibrahim, B. Ibrahim, 2017, Mathematical biosciences and engineering : MBE.

Stochastic effects in a compartmental model for mitotic checkpoint regulation

Peter Dittrich, Bashar Ibrahim, Eberhard Schmitt, 2007, J. Integr. Bioinform..

Multi-scale stochastic organization-oriented coarse-graining exemplified on the human mitotic checkpoint

Peter Dittrich, David Parker, Bashar Ibrahim, 2019, Scientific Reports.

Semiotic Structures and Meaningful Information in Biological Systems

Bashar Ibrahim, Peter Dittrich, Stephan Diekmann, 2018 .

A Mathematical Framework for Kinetochore-Driven Activation Feedback in the Mitotic Checkpoint

Bashar Ibrahim, B. Ibrahim, 2017, Bulletin of mathematical biology.

In silico spatial simulations reveal that MCC formation and excess BubR1 are required for tight inhibition of the anaphase-promoting complex.

Bashar Ibrahim, B. Ibrahim, 2015, Molecular bioSystems.

A new era of virus bioinformatics.

Martin Beer, Manja Marz, Bashar Ibrahim, 2018, Virus research.

The role of localization in the operation of the mitotic spindle assembly checkpoint

Peter Dittrich, Bashar Ibrahim, Maiko Lohel, 2009, Cell cycle.

Cycles and the Qualitative Evolution of Chemical Systems

Tomas Veloz, Peter Dittrich, Gabi Escuela, 2012, PloS one.

Rule-based modeling and simulations of the inner kinetochore structure.

Peter Dittrich, Gerd Gruenert, Bashar Ibrahim, 2013, Progress in biophysics and molecular biology.

Modeling potent pathways for APC/C inhibition: pivotal roles for MCC and BubR1

Bashar Ibrahim, B. Ibrahim, 2016, 1611.04781.

A Dynamical Model for Activating and Silencing the Mitotic Checkpoint

Peter Dittrich, Bashar Ibrahim, P. Dittrich, 2017, Scientific Reports.

Active Transport Can Greatly Enhance Cdc20:Mad2 Formation

Bashar Ibrahim, B. Ibrahim, R. Henze, 2014, International journal of molecular sciences.

Toward a systems-level view of mitotic checkpoints.

Bashar Ibrahim, B. Ibrahim, 2015, Progress in biophysics and molecular biology.

Elm1 kinase activates the spindle position checkpoint kinase Kin4

Bashar Ibrahim, B. Ibrahim, G. Pereira, 2010, The Journal of cell biology.

Mad2 binding is not sufficient for complete Cdc20 sequestering in mitotic transition control (an in silico study).

Peter Dittrich, Bashar Ibrahim, P. Dittrich, 2008, Biophysical chemistry.