Quinn Snell

发表

Large Grain Size Stochastic Optimization Alignment

Perry G. Ridge, Hyrum Carroll, Dan Sneddon, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

Mark J. Clement, Quinn Snell, John Jardine, 2001, Proceedings 10th IEEE International Symposium on High Performance Distributed Computing.

An open source phylogenetic search and alignment package

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2009, Int. J. Bioinform. Res. Appl..

On the use of cartographic projections in visualizing phylo-genetic tree space

Mark J. Clement, Quinn Snell, Kenneth Sundberg, 2010, Algorithms for Molecular Biology.

Modeling Global and local Codon Bias with Deep Language Models

Mark J. Clement, Quinn Snell, Cole A. Lyman, 2017, 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE).

Parallel Algorithm and Processor Selection Based on Fuzzy Logic

Mark J. Clement, Quinn Snell, Bryan S. Morse, 1999, HPCN Europe.

Design issues for efficient implementation of MPI in Java

Mark J. Clement, Quinn Snell, Vladimir Getov, 1999, JAVA '99.

Parallel Mapping Approaches for GNUMAP

Mark J. Clement, Quinn Snell, Nathan L. Clement, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

Parallel Phylogenetic Inference

Mark J. Clement, Quinn Snell, David McLaughlin, 2000, ACM/IEEE SC 2000 Conference (SC'00).

Visualizing Phylogenetic Treespace Using Cartographic Projections

Mark J. Clement, Quinn Snell, Kenneth Sundberg, 2009, WABI.

Core Algorithms of the Maui Scheduler

Mark J. Clement, Quinn Snell, David B. Jackson, 2001, JSSPP.

The Performance Impact of Advance Reservation Meta-scheduling

Mark J. Clement, Quinn Snell, David B. Jackson, 2000, JSSPP.

Identification and correction of substitution errors in Moleculo long reads

Mark J. Clement, Quinn Snell, Jared C. Price, 2013, 13th IEEE International Conference on BioInformatics and BioEngineering.

Haplotype-centered mapping for improved alignments and genetic association studies

Perry G. Ridge, Mark J. Clement, Quinn Snell, 2014, BCB.

Heterozygous genome assembly via binary classification of homologous sequence

Mark J. Clement, Quinn Snell, Paul Bodily, 2015, BMC Bioinformatics.

HINT: A new way to measure computer performance

Quinn Snell, John L. Gustafson, Q. Snell, 1995, Proceedings of the Twenty-Eighth Annual Hawaii International Conference on System Sciences.

Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2007, Formal Methods in Computer Aided Design (FMCAD'07).

A structured approach to ensemble learning for Alzheimer's disease prediction

Mark J. Clement, Quinn Snell, Paul Bodily, 2014, BCB.

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing

Mark J. Clement, Quinn Snell, Barbara J. Graves, 2010, Bioinform..

A performance broker for CORBA

Mark J. Clement, Quinn Snell, Kevin Butler, 1999, Proceedings. The Eighth International Symposium on High Performance Distributed Computing (Cat. No.99TH8469).

PathGen: a transitive gene pathway generator

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2010, Bioinform..

Object Placement Using Performance Surfaces

Mark J. Clement, Quinn Snell, André Turgeon, 2004, Cluster Computing.

High performance phylogenetic inference

Mark J. Clement, Quinn Snell, Glenn Judd, 1999, Proceedings. The Eighth International Symposium on High Performance Distributed Computing (Cat. No.99TH8469).

High Performance Computing for the Masses

Mark J. Clement, Quinn Snell, Glenn Judd, 1999, IPPS/SPDP Workshops.

You Don’t Have Time to Read This: An Exploration of Document Reading Time Prediction

Quinn Snell, Kevin D. Seppi, Jordan Hildebrandt, 2020, ACL.

Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem

Mark J. Clement, Quinn Snell, James D. Jensen, 2013, BMC Bioinformatics.

Parsimony accelerated Maximum Likelihood searches

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2008, Int. J. Comput. Biol. Drug Des..

Parallel Pair-HMM SNP Detection

Mark J. Clement, Quinn Snell, Paul Bodily, 2012, 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum.

Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs

Hyrum Carroll, Quinn Snell, Eric Mercer, 2007 .

Aggressive telecommunications overbooking ratios

Mark J. Clement, Quinn Snell, Feng Huang, 2004, IEEE International Conference on Performance, Computing, and Communications, 2004.

Preemption Based Backfill

Mark J. Clement, Quinn Snell, David B. Jackson, 2002, JSSPP.

Accelerated large-scale multiple sequence alignment

Quinn Snell, Scott Lloyd, Q. Snell, 2011, BMC Bioinformatics.

Incomparability of Results Between Phylogenetic Search Programs

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2008, BIOCOMP.

Phylogenetic search through partial tree mixing

Mark J. Clement, Quinn Snell, Dan Ventura, 2012, BMC Bioinformatics.

DNA reference alignment benchmarks based on tertiary structure of encoded proteins

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2007, Bioinform..

Application placement using performance surfaces

Quinn Snell, Andr 6 Turgeon, Mark Clement, 2000, Proceedings the Ninth International Symposium on High-Performance Distributed Computing.

The Impact of Equally-Optimal Pairwise Alignments

Mark J. Clement, Quinn Snell, Lukas Olson, 2010, BIOCOMP.

Effects of error-correction of heterozygous next-generation sequencing data

Mark J. Clement, Quinn Snell, Paul Bodily, 2014, BMC Bioinformatics.

Inferring gene regulatory networks from asynchronous microarray data with AIRnet

Mark J. Clement, Quinn Snell, Kenneth Sundberg, 2010, BMC Genomics.

GNUMAP 4.0: Space and Time Efficient NGS Read Mapping Using the FM-Index

Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, 2018 .

Jumpstarting phylogenetic analysis

Mark J. Clement, Quinn Snell, Kevin D. Seppi, 2006, Int. J. Bioinform. Res. Appl..

Spatially Indexing Sequences using Hashes

Mark J. Clement, Quinn Snell, Mike Eagar, 2010, BIOCOMP.

Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data

Mark J. Clement, Quinn Snell, Kenneth Sundberg, 2008, BIOCOMP.

An enterprise-based grid resource management system

Mark J. Clement, Quinn Snell, Kevin Tew, 2002, Proceedings 11th IEEE International Symposium on High Performance Distributed Computing.

Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction

Mark J. Clement, Quinn Snell, Cole A. Lyman, 2017, 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE).

Efficient Team Formation in Social Networks based on Constrained Pattern Graph

Derong Shen, Tiezheng Nie, Ge Yu, 2020, 2020 IEEE 36th International Conference on Data Engineering (ICDE).

High Performance Scheduling for Windows NT

Mark J. Clement, Quinn Snell, David B. Jackson, 1999, PDPTA.

Simulation based HPC workload analysis

Quinn Snell, Heather L. Jackson, David B. Jackson, 2001, Proceedings 15th International Parallel and Distributed Processing Symposium. IPDPS 2001.

The YGuard access control model: set-based access control

Mark J. Clement, Quinn Snell, Ty van den Akker, 2001, SACMAT '01.

Feature identification and reduction for improved generalization accuracy in secondary-structure prediction

Mark J. Clement, Quinn Snell, Matt Seeley, 2013, 13th IEEE International Conference on BioInformatics and BioEngineering.

A Survivable Multi-agent Approach to Network Routing

Mark J. Clement, Quinn Snell, Casey T. Deccio, 2004, Communications in Computing.

Prioritized multiplicative Schwarz procedures for solving linear systems

Quinn Snell, Kevin D. Seppi, David Wingate, 2005, 19th IEEE International Parallel and Distributed Processing Symposium.

Improving cluster utilization through set based allocation policies

Quinn Snell, Julio C. Facelli, David B. Jackson, 2001, Proceedings International Conference on Parallel Processing Workshops.

ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

Large-Scale Lattice Gas Monte Carlo Simulations for the Generalized Ising Model

Quinn Snell, Gus L. W. Hart, Stefan Müller, 2011, 2011 IEEE International Parallel & Distributed Processing Symposium.

TCS: estimating gene genealogies

Mark J. Clement, Quinn Snell, David Posada, 2002, Proceedings 16th International Parallel and Distributed Processing Symposium.

Phylogenies scores for exhaustive searches and parsimony scores searches

Perry G. Ridge, Hyrum Carroll, Mark J. Clement, 2007, Int. J. Bioinform. Res. Appl..

Using Parsimony to Guide Maximum Likelihood Searches

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

The OGCleaner: filtering false-positive homology clusters

Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, 2017, Bioinform..

Parallel hierarchical global illumination

Quinn Snell, John L. Gustafson, Q. Snell, 1997, Proceedings. The Sixth IEEE International Symposium on High Performance Distributed Computing (Cat. No.97TB100183).

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

Mark J. Clement, Quinn Snell, Nathan L. Clement, 2013, BMC Bioinformatics.

HiCOMB Introduction

Srinivas Aluru, David A. Bader, Mark J. Clement, 2012, 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.

Analysis of Long Branch Extraction

Hyrum Carroll, Mark J. Clement, Quinn Snell, 2009, BIOCOMP.

DOGMA: Distributed Object Group Management Architecture

Mark J. Clement, Quinn Snell, Glenn Judd, 1998 .

DOGMA: distributed object group metacomputing architecture

Mark J. Clement, Quinn Snell, Glenn Judd, 1998, Concurr. Pract. Exp..

ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction

Mark J. Clement, Quinn Snell, Dan Ventura, 2015, Bioinform..

Hardware Accelerated Sequence Alignment with Traceback

Quinn Snell, Scott Lloyd, Q. Snell, 2009, Int. J. Reconfigurable Comput..

The DOGMA approach to high-utilization supercomputing

Mark J. Clement, Quinn Snell, Glenn Judd, 1998, Proceedings. The Seventh International Symposium on High Performance Distributed Computing (Cat. No.98TB100244).

A packet-switched network architecture for reconfigurable computing

Quinn Snell, Scott Lloyd, 2009, TECS.

Effects of Gap Open and Gap Extension Penalties

Perry G. Ridge, Hyrum Carroll, Mark J. Clement, 2006 .

Compiler Optimization of Accelerator Data Transfers

Quinn Snell, David A. Penry, Matthew B. Ashcraft, 2017, International Journal of Parallel Programming.

Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs

Mark J. Clement, Quinn Snell, Cole A. Lyman, 2017, 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE).

Sequence Alignment with Traceback on Reconfigurable Hardware

Quinn Snell, Scott Lloyd, 2008, 2008 International Conference on Reconfigurable Computing and FPGAs.

Application of a MAX-CUT Heuristic to the Contig Orientation Problem in Genome Assembly

Mark J. Clement, Quinn Snell, Paul Bodily, 2013, BCB.

Qnet: A Modular Architecture for Reconfigurable Computing

Quinn Snell, Scott Lloyd, 2008, ERSA.

The DOGMA Approach to Parallel and Distributed Computing

Mark J. Clement, Quinn Snell, Glenn Judd, 1999, Scalable Comput. Pract. Exp..

An Analytical Model of the HINT Performance Metric

Quinn Snell, John L. Gustafson, Q. Snell, 1996, Proceedings of the 1996 ACM/IEEE Conference on Supercomputing.

Phylogenetics The OGCleaner : filtering false-positive homology clusters

Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, 2016 .

Pathoscope: Species identification and strain attribution with unassembled sequencing data

Quinn Snell, Changjin Hong, Keith A Crandall, 2013, Genome research.

Analysis of long branch extraction and long branch shortening

Hyrum Carroll, Quinn Snell, Mark Clement, 2010, BMC Genomics.

Parallel Algorithms For Image Convolution yShuling

Quinn Snell, Mark Clement, Yu, 2007 .