Francesco Vezzi

发表

Algorithms and Data Structures for Next‐Generation Sequences

Giuseppe Lancia, Alberto Policriti, Francesco Vezzi, 2013 .

mrNA: The MPI Randomized Numerical Aligner

Alberto Policriti, Francesco Vezzi, Cristian Del Fabbro, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons

Bud Mishra, Francesco Vezzi, Giuseppe Narzisi, 2012, PloS one.

GAM-NGS: genomic assemblies merger for next generation sequencing

Alberto Policriti, Lars Arvestad, Francesco Vezzi, 2013, BMC Bioinformatics.

GAM: Genomic Assemblies Merger

Francesco Vezzi, Riccardo Vicedomini, Simone Scalabrin, 2012 .

BESST - Efficient scaffolding of large fragmented assemblies

Lars Arvestad, Kristoffer Sahlin, Francesco Vezzi, 2014, BMC Bioinformatics.

Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2

Alberto Policriti, Francesco Vezzi, Nicola Prezza, 2016, BMC Bioinformatics.

A Multi-objective Optimisation Approach to the Design of Experiment in De Novo Assembly Projects

Alberto Policriti, Francesco Vezzi, Francesca Nadalin, 2012, 2012 23rd International Workshop on Database and Expert Systems Applications.

ERNE-BS5: aligning BS-treated sequences by multiple hits on a 5-letters alphabet

Alberto Policriti, Francesco Vezzi, Nicola Prezza, 2012, BCB '12.

A randomized Numerical Aligner (rNA)

Alberto Policriti, Alexandru I. Tomescu, Francesco Vezzi, 2012, J. Comput. Syst. Sci..

rNA: a fast and accurate short reads numerical aligner

Alberto Policriti, Alexandru I. Tomescu, Francesco Vezzi, 2012, Bioinform..

Estimating the rate of index hopping on the Illumina HiSeq X platform

Francesco Vezzi, Tom van der Valk, Mattias Ormestad, 2017, bioRxiv.

GapFiller: a de novo assembly approach to fill the gap within paired reads

Alberto Policriti, Francesco Vezzi, Francesca Nadalin, 2012, BMC Bioinformatics.

Enhanced reference guided assembly

Alberto Policriti, Francesco Vezzi, Federica Cattonaro, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A Randomized Numerical Aligner (rNA)

Alberto Policriti, Alexandru I. Tomescu, Francesco Vezzi, 2010, LATA.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

Recommendations on e-infrastructures for next-generation sequencing

Ola Spjuth, Francesco Vezzi, Johan Dahlberg, 2016, GigaScience.

Hierarchical Assembly of Pools

Alberto Policriti, Lars Arvestad, Francesco Vezzi, 2015, IWBBIO.

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping

Francesco Vezzi, Volkmar Passoth, Max Käller, 2015, GigaScience.

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

Francesco Vezzi, Johan Dahlberg, Ulf Gyllensten, 2018, bioRxiv.

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

Andrey Alexeyenko, Bjarne Knudsen, Francesco Vezzi, 2013, BMC Genomics.

Whole‐Genome Sequencing of Cytogenetically Balanced Chromosome Translocations Identifies Potentially Pathological Gene Disruptions and Highlights the Importance of Microhomology in the Mechanism of Formation

Daniel Nilsson, Anna Lindstrand, Francesco Vezzi, 2017, Human mutation.

De novo assembly of two Swedish genomes reveals missing segments from the human GRCh38 reference and improves variant calling of population-scale sequencing data

Francesco Vezzi, Johan Dahlberg, Ulf Gyllensten, 2018 .

TIDDIT, an efficient and comprehensive structural variant caller

Jesper Eisfeldt, Daniel Nilsson, Anna Lindstrand, 2017 .

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

Francesco Vezzi, Katerina Guschanski, Tom van der Valk, 2018, Molecular ecology resources.