Jason S. Cumbie

发表

Update of ASRP: the Arabidopsis Small RNA Project database

Tyler W. H. Backman, Christopher M. Sullivan, Scott A. Givan, 2007, Nucleic Acids Res..

Computational and analytical framework for small RNA profiling by high-throughput sequencing.

Tyler W. H. Backman, Tyler W H Backman, Scott A Givan, 2009, RNA.

high-throughput sequencing Computational and analytical framework for small RNA profiling by Material Supplemental

Jason S. Cumbie, C. Sullivan, S. Givan, 2009 .

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Jason S. Cumbie, C. Sullivan, S. Givan, 2007, PLoS biology.

Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis.

Elizabeth A. Savory, Jeff H. Chang, Jason S. Cumbie, 2015, Molecular plant-microbe interactions : MPMI.

Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.

Jeff H. Chang, Jason S. Cumbie, M. Megraw, 2014, Molecular plant.

High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes

Jason S. Cumbie, C. Sullivan, S. Givan, 2007, PloS one.

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

Jeff H. Chang, Jason S. Cumbie, Samuel E. Fox, 2011, PloS one.

Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting[W][OA]

Scott A Givan, Noah Fahlgren, Jason S. Cumbie, 2007, The Plant Cell Online.

Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression

Sarah C. Emerson, Gu Mi, Jeff H. Chang, 2012, PloS one.

RNA-Seq for Plant Pathogenic Bacteria

Jeff H. Chang, Jason S. Cumbie, Y. Di, 2011, Genes.

Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting

Jason S. Cumbie, C. Sullivan, S. Givan, 2007 .

Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants

Molly Megraw, Jason S. Cumbie, M. Megraw, 2016, Plant Cell.

Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis1[C][W]

Stefan R. Henz, Jason S. Cumbie, M. Schmid, 2007, Plant Physiology.

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Jason S. Cumbie, Y. Di, P. Jaiswal, 2013, PLoS genetics.

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites

Jason S. Cumbie, M. Megraw, M. Ivanchenko, 2015, BMC Genomics.

Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny

David A. Baltrus, Jeff H. Chang, Jason S. Cumbie, 2014, PLoS pathogens.

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites

Jason S. Cumbie, M. Megraw, M. Ivanchenko, 2015, BMC Genomics.

The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq

Jeff H. Chang, Jason S. Cumbie, D. W. Schafer, 2011 .

Update of ASRP: the Arabidopsis Small RNA Project database

Tyler W. H. Backman, Jason S. Cumbie, C. Sullivan, 2007, Nucleic Acids Research.

Statistical Applications in Genetics and Molecular Biology The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq

Jeff H. Chang, Jason S. Cumbie, D. W. Schafer, 2011 .

Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana

Jason S. Cumbie, M. Megraw, S. Filichkin, 2015, Plant Methods.