Tamar V. Av-Shalom

An expectation-maximization-like algorithm enables accurate ecological modeling using longitudinal metagenome sequencing data

Niranjan Nagarajan, Chenhao Li, Kern Rei Chng, 2018 .

Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper

Tamar V. Av-Shalom, Phillip A. Richmond, Wyeth W Wasserman, 2020, bioRxiv.

BEEM-Static: Accurate inference of ecological interactions from cross-sectional metagenomic data

Niranjan Nagarajan, Chenhao Li, Kern Rei Chng, 2020, bioRxiv.

An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data

Niranjan Nagarajan, Chenhao Li, Tamar V. Av-Shalom, 2019, Microbiome.

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.