Lisa Tucker-Kellogg

发表

An expectation-maximization-like algorithm enables accurate ecological modeling using longitudinal metagenome sequencing data

Niranjan Nagarajan, Chenhao Li, Kern Rei Chng, 2018 .

Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics

Jacob K. White, Lisa Tucker-Kellogg, Tri Hieu Nim, 2015, PLoS Comput. Biol..

Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP

Jacob K. White, Shazib Pervaiz, Yuan Shi, 2012, Bioinform..

System Biology Modeling with Compositional Microbiome Data Reveals Personalized Gut Microbial Dynamics and Keystone Species

Chenhao Li, Lisa Tucker-Kellogg, Niranjan Nagarajan, 2018, bioRxiv.

Systematic conformational search with constraint satisfaction

Lisa Tucker-Kellogg, L. Tucker-Kellogg, 2002 .

In silico identification of endo16 regulators in the sea urchin endomesoderm gene regulatory network

Sourav S. Bhowmick, Qing Zhao, Hanry Yu, 2012, IHI '12.

Systematic parameter estimation in data-rich environments for cell signalling dynamics

Jacob K. White, Lisa Tucker-Kellogg, Tri Hieu Nim, 2013, Bioinform..

Transcompp: understanding phenotypic plasticity by estimating Markov transition rates for cell state transitions

Lisa Tucker-Kellogg, N Suhas Jagannathan, Mario O Ihsan, 2020, Bioinform..

STEROID: in silico heuristic target combination identification for disease-related signaling networks

Sourav S. Bhowmick, Lisa Tucker-Kellogg, Huey-Eng Chua, 2012, BCB.

TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks

Sourav S. Bhowmick, Lisa Tucker-Kellogg, Huey-Eng Chua, 2016, BCB.

TENET: topological feature-based target characterization in signalling networks

Sourav S. Bhowmick, Lisa Tucker-Kellogg, Huey-Eng Chua, 2015, Bioinform..

Synergistic target combination prediction from curated signaling networks: Machine learning meets systems biology and pharmacology.

Huey Eng Chua, Lisa Tucker-Kellogg, Sourav S Bhowmick, 2017, Methods.

The Self-Limiting Dynamics of TGF-β Signaling In Silico and In Vitro, with Negative Feedback through PPM1A Upregulation

Junjie Wang, Jacob K. White, P. S. Thiagarajan, 2014, PLoS Comput. Biol..

SPEDRE: a web server for estimating rate parameters for cell signaling dynamics in data-rich environments

Jacob K. White, Lisa Tucker-Kellogg, Tri Hieu Nim, 2013, Nucleic Acids Res..

Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation

David Hsu, P. S. Thiagarajan, Lisa Tucker-Kellogg, 2007, WABI.

The Steady States and Dynamics of Urokinase-mediated Plasmin Activation

Sourav S. Bhowmick, Hanry Yu, Lisa Tucker-Kellogg, 2010, Pacific Symposium on Biocomputing.

One feature doesn't fit all: characterizing topological features of targets in signaling networks

Sourav S. Bhowmick, Lisa Tucker-Kellogg, Huey-Eng Chua, 2014, BCB.

pFlexAna: detecting conformational changes in remotely related proteins

David Hsu, Lisa Tucker-Kellogg, Anshul Nigham, 2008, Nucleic Acids Res..

PANI: an interactive data-driven tool for target prioritization in signaling networks

Sourav S. Bhowmick, Hanry Yu, Lisa Tucker-Kellogg, 2012, IHI '12.

Superpixel-based segmentation of muscle fibers in multi-channel microscopy

Binh P. Nguyen, Lisa Tucker-Kellogg, Peter T. C. So, 2016, BMC Systems Biology.

Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model

Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg, 2017, BMC Systems Biology.

Pani: a novel algorithm for fast discovery of putative target nodes in signaling networks

Sourav S. Bhowmick, Qing Zhao, Hanry Yu, 2011, BCB '11.

TENET: A Machine Learning-Based System for Target Characterization in Signaling Networks

Sourav S. Bhowmick, Lisa Tucker-Kellogg, Huey-Eng Chua, 2016, 2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW).

TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking

Sourav S. Bhowmick, Lisa Tucker-Kellogg, Huey-Eng Chua, 2017, BCB.

Plasmin triggers a switch-like decrease in thrombospondin-dependent activation of TGF-β1.

Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg, 2012, Biophysical journal.

An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data

Niranjan Nagarajan, Chenhao Li, Tamar V. Av-Shalom, 2019, Microbiome.

Cell-delivery therapeutics for liver regeneration.

Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg, 2010, Advanced drug delivery reviews.

Combination Therapy and the Evolution of Resistance: The Theoretical Merits of Synergism and Antagonism in Cancer.

Lisa Tucker-Kellogg, L. Tucker-Kellogg, Elysia C Saputra, 2018, Cancer research.

COMPUTATIONAL MODELING OF PATHWAY DYNAMICS FOR DETECTING DRUG EFFECTS : PARADOXICAL EFFECTS OF LY 303511 ON TRAIL-INDUCED APOPTOSIS

Jacob K. White, Shazib Pervaiz, Lisa Tucker-Kellogg, 2009 .

Steady states and dynamics of urokinase-mediated plasmin activation in silico and in vitro.

Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg, 2011, Biophysical journal.

Simulating EGFR-ERK Signaling Control by Scaffold Proteins KSR and MP1 Reveals Differential Ligand-Sensitivity Co-Regulated by Cbl-CIN85 and Endophilin

Lisa Tucker-Kellogg, Boon Chuan Low, Bruce Tidor, 2011, PloS one.