Clare Stirzaker

发表

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection

Susan J. Clark, Phuc-Loi Luu, Phuc-Thinh Ong, 2020, bioRxiv.

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements

Terence P. Speed, Jenny Song, Timothy J. Peters, 2018, Bioinform..

Repitools: an R package for the analysis of enrichment-based epigenomic data

Dario Strbenac, Mark D. Robinson, Clare Stirzaker, 2010, Bioinform..

BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach

Andrea Riebler, Mark D Robinson, Clare Stirzaker, 2013, Genome Biology.

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection

Susan J. Clark, Phuc-Loi Luu, Phuc-Thinh Ong, 2021, Bioinform..

Quantitative comparison of DNA methylation assays for biomarker development and clinical applications

Kimberly Walter, David S. Shames, Peter W. Laird, 2016, Nature Biotechnology.

Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity

Mark D. Robinson, Terence P. Speed, Carlos S. Moreno, 2010, Nature Cell Biology.

Regional activation of the cancer genome by long-range epigenetic remodeling.

Dario Strbenac, Robert L Sutherland, Mark D Robinson, 2013, Cancer cell.

Replication timing shapes the cancer epigenome and the nature of chromosomal rearrangements

Cathryn M. Gould, Susan J. Clark, Clare Stirzaker, 2018, bioRxiv.

DNA methylation: Bisulphite modification and analysis

Peter L Molloy, Clare Stirzaker, Susan J Clark, 2006, Nature Protocols.

Copy-number-aware differential analysis of quantitative DNA sequencing data

Dario Strbenac, Terence P Speed, Mark D Robinson, 2012, Genome research.

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

Aaron T. L. Lun, Fabian A. Buske, Denis C. Bauer, 2016, Genome research.

DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer

Matt Trau, Darren Korbie, Susan J. Clark, 2015, Nature Communications.

Loss of Special AT-Rich Binding Protein 1 Expression is a Marker of Poor Survival in Lung Cancer

Clare Stirzaker, C. Selinger, M. Kohonen-Corish, 2011, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

Identification and resolution of artifacts in bisulfite sequencing.

Christoph Grunau, Clare Stirzaker, Susan J Clark, 2002, Methods.

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Dario Strbenac, Terence P Speed, Mark D Robinson, 2010, Genome research.

Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band

Clare Stirzaker, Susan J Clark, S. Clark, 2006, Nature Genetics.

Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value

Rodney J Scott, Matt Trau, Mark D Robinson, 2015, Nature Communications.

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias

Dario Strbenac, Mark D Robinson, Clare Stirzaker, 2011, Epigenetics.