Catia Pesquita

发表

A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts

Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, 2018, EKAW.

Visualization and editing of biomedical ontology alignments in AgreementMakerLight

Catia Pesquita, Catarina Martins, Daniel Faria, 2015, ICBO.

What's in a 'nym'? Synonyms in Biomedical Ontology Matching

Emanuel Santos, Cosmin Stroe, Isabel F. Cruz, 2013, SEMWEB.

The Biomedical Ontology Applications (BOA) Framework

Catia Pesquita, Daniel Faria, João D. Ferreira, 2011, ICBO.

BLOOMS on AgreementMaker: results for OAEI 2010

Cosmin Stroe, Isabel F. Cruz, Catia Pesquita, 2010, OM.

GOclasses: molecular function as viewed by proteins

Catia Pesquita, André O. Falcão, Daniel Faria, 2009 .

Identifying bioentity recognition errors of rule-based text-mining systems

Christian Blaschke, Catia Pesquita, Francisco M. Couto, 2008, 2008 Third International Conference on Digital Information Management.

The AgreementMakerLight Ontology Matching System

Emanuel Santos, Isabel F. Cruz, Catia Pesquita, 2013, OTM Conferences.

AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching

Emanuel Santos, Isabel F. Cruz, Catia Pesquita, 2014, SEMWEB.

CESSM: collaborative evaluation of semantic similarity measures

Delphine Pessoa, Catia Pesquita, Daniel Faria, 2009 .

AML results for OAEI 2015

Aynaz Taheri, Isabel F. Cruz, Catia Pesquita, 2015, OM.

Biomedical Ontologies: Coverage, Access and Use

Catia Pesquita, João D. Ferreira, David C. Teixeira, 2021, Systems Medicine.

Introduction to VISUAL 2014 - Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics

Kai Xu, Valentina Ivanova, Steffen Lohmann, 2014, EKAW.

VOILA 2015 Visualizations and User Interfaces for Ontologies and Linked Data : Proceedings of the International Workshop on Visualizations and User Interfaces for Ontologies and Linked Data

Patrick Lambrix, Catia Pesquita, Steffen Lohmann, 2015 .

To repair or not to repair: reconciling correctness and coherence in ontology reference alignments

Emanuel Santos, Catia Pesquita, Daniel Faria, 2013, OM.

Results of AML participation in OAEI 2018

Isabel F. Cruz, Catia Pesquita, Daniel Faria, 2018, OM@ISWC.

AML and AMLC Results for OAEI 2019

Isabel F. Cruz, Catia Pesquita, Daniel Faria, 2019, OM@ISWC.

Ontology matching techniques for enterprise architecture models

José Luis Borbinha, Catia Pesquita, Marzieh Bakhshandeh, 2015, OM.

Predicting the Extension of Biomedical Ontologies

Catia Pesquita, Francisco M. Couto, Catia Pesquita, 2012, PLoS Comput. Biol..

Handling self-citations using Google Scholar

Paulo Veríssimo, Catia Pesquita, Francisco M. Couto, 2009 .

AgreementMakerLight results for OAEI 2013

Isabel F. Cruz, Catia Pesquita, Daniel Faria, 2013, OM.

VOILA! 2017: Proceedings of the Third International Workshop on Visualization and Interaction for Ontologies and Linked Data : co-located with the 16th International Semantic Web Conference, Vienna, Austria, October 22, 2017.

Valentina Ivanova, Steffen Lohmann, Patrick Lambrix, 2017 .

Taking GO where we need it to go: focused automated enrichment of the Gene Ontology

Catia Pesquita, Francisco M. Couto, 2011 .

BOLOS: BLAST & Ontology Linked-hOmologue Stars

Catia Pesquita, André O. Falcão, Daniel Faria, 2008, SAC '08.

Special issue on ontology and linked data matching

Jérôme Euzenat, Michelle Cheatham, Isabel F. Cruz, 2017, Semantic Web.

A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain

Catia Pesquita, Sebastian Köhler, Carlota Cardoso, 2020, ESWC.

ProteInOn: A Web Tool for Protein Semantic Similarity

Catia Pesquita, André O. Falcão, Daniel Faria, 2007 .

User Validation in Ontology Alignment

Patrick Lambrix, Catia Pesquita, Daniel Faria, 2016, SEMWEB.

Evolving knowledge graph similarity for supervised learning in complex biomedical domains

Catia Pesquita, Rita T. Sousa, Sara Silva, 2020, BMC Bioinformatics.

The Process Model Matching Contest 2015

Peter Loos, Matthias Weidlich, Heiner Stuckenschmidt, 2013, EMISA.

User validation in ontology alignment: functional assessment and impact

Patrick Lambrix, Catia Pesquita, Daniel Faria, 2019, Knowl. Eng. Rev..

Measuring coherence between electronic and manual annotations in biological databases

Catia Pesquita, Daniel Faria, Francisco M. Couto, 2009, SAC '09.

Collaborative Evaluation of GO-based Similarity Measures

Delphine Pessoa, Catia Pesquita, Daniel Faria, 2009 .

Biomedical Ontology Matching Using the AgreementMaker System

Valerie V. Cross, Cosmin Stroe, Isabel F. Cruz, 2011, ICBO.

Towards visualizing the mapping incoherences in Bioportal

Emanuel Santos, Catia Pesquita, Catarina Martins, 2015, ICBO.

Untangling BioOntologies for Mining Biomedical Information

Mário J. Silva, Catia Pesquita, Daniel Faria, 2008 .

Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics (EKAW 2014 Satellite Events)

Valentina Ivanova, Steffen Lohmann, Tomi Kauppinen, 2015 .

Towards Annotating Potential Incoherences in BioPortal Mappings

Catia Pesquita, Daniel Faria, Francisco M. Couto, 2014, SEMWEB.

Chemical Entity Recognition and Resolution to ChEBI

Catia Pesquita, Francisco M. Couto, Tiago Grego, 2012, ISRN bioinformatics.

Improving the interoperability of biomedical ontologies with compound alignments

Catia Pesquita, Daniela Oliveira, Catia Pesquita, 2018, Journal of Biomedical Semantics.

Ontology Alignment Repair through Modularization and Confidence-Based Heuristics

Emanuel Santos, Catia Pesquita, Daniel Faria, 2013, PloS one.

Phillip W. Lord, Catia Pesquita, André O. Falcão, 2009, PLoS Comput. Biol..

Proceedings of the International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics

Valentina Ivanova, Steffen Lohmann, Tomi Kauppinen, 2014 .

Using GO terms to evaluate protein clustering

Catia Pesquita, André O. Falcão, Daniel Faria, 2007 .

GO where we need it to go: focused automated enrichment of the Gene Ontology.Student Council Symposium

Catia Pesquita, Francisco M. Couto, 2009 .

Results of AML in OAEI 2017

Isabel F. Cruz, Catia Pesquita, Daniel Faria, 2017, OM@ISWC.

The properties of property alignment on the semantic web

Michelle Cheatham, Catia Pesquita, Helena B. McCurdy, 2018, Int. J. Metadata Semant. Ontologies.

Complex matching for multiple ontologies: an exploratory study

Catia Pesquita, Madalena Pavão, 2018, OM@ISWC.

Voila 2018 visualization and interaction for ontologies and linked data

Patrick Lambrix, Catia Pesquita, Steffen Lohmann, 2018 .

Evaluating GO-based Semantic Similarity Measures

Catia Pesquita, André O. Falcão, Daniel Faria, 2007 .

Compound matching of biomedical ontologies

Catia Pesquita, Daniela Oliveira, Catia Pesquita, 2015, ICBO.

Proceedings of the International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics co-located with 19th International Conference on Knowledge Engineeri

Valentina Ivanova, Steffen Lohmann, Tomi Kauppinen, 2014 .

Visual 2014 : Visualizations and user interfaces for knowledge engineering and linked data analytics : Proceedings of the international workshop on visualizations and user interfaces for knowledge engineering and linked data analytics (VISUAL)

Valentina Ivanova, Steffen Lohmann, Tomi Kauppinen, 2014 .

Using AgreementMaker to align ontologies for OAEI 2010

Cosmin Stroe, Isabel F. Cruz, Catia Pesquita, 2010, OM.

Crowd-assessing quality in uncertain data linking datasets

Alfio Ferrara, Stefano Montanelli, Catia Pesquita, 2020, The Knowledge Engineering Review.

Application of gene ontology to gene identification.

Catia Pesquita, Daniel Faria, Francisco M. Couto, 2011, Methods in molecular biology.

OAEI 2016 results of AML

João Cardoso, Isabel F. Cruz, Catia Pesquita, 2016, OM@ISWC.

A Collection of Benchmark Data Sets for Knowledge Graph-Based Similarity in the Biomedical Domain

Catia Pesquita, Carlota Cardoso, Rita T. Sousa, 2020, ESWC.

Metrics for GO based protein semantic similarity: a systematic evaluation

Catia Pesquita, André O. Falcão, Daniel Faria, 2008, BMC Bioinformatics.

VOILA! 2016 : Proceedings of the 2nd International Workshop on Visualization and Interaction for Ontologies and Linked Data, Co-located with ISWC 2016, Kobe, Japan, October 17, 2016

Valentina Ivanova, Steffen Lohmann, Patrick Lambrix, 2016 .

Workshop Summary

Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, 2016, VOILA@ISWC.

Towards Visualizing the Alignment of Large Biomedical Ontologies

Emanuel Santos, Catia Pesquita, Daniel Faria, 2014, DILS.

The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources

Mário J. Silva, Mário J. Silva, Catia Pesquita, 2014, Journal of Biomedical Semantics.

Chemical and Metabolic Pathway Semantic Similarity

Catia Pesquita, João D. Ferreira, Francisco M. Couto, 2010 .

Identifying Gene Ontology Areas for Automated Enrichment

Catia Pesquita, Francisco M. Couto, Tiago Grego, 2009, IWANN.

FLORAL: Semantic and Lexical Matching of Biomedical Ontologies

Catia Pesquita, João D. Ferreira, Francisco M. Couto, 2011 .

Inferring logical definitions using compound ontology matching

Catia Pesquita, Daniela Oliveira, 2015, ICBO.

Catia Pesquita, Catia Pesquita, 2017, Methods in molecular biology.

Building reference alignments for compound matching of multiple ontologies using OBO cross-products

Emanuel Santos, Michelle Cheatham, Catia Pesquita, 2014, OM.

BLOOMS on AgreementMaker

Cosmin Stroe, Isabel F. Cruz, Catia Pesquita, 2010, ISWC 2010.

Visualization and interaction for ontologies and linked data - Editorial

Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, 2018, J. Web Semant..

Testing the AgreementMaker System in the Anatomy Task of OAEI 2012 pdf

Emanuel Santos, Cosmin Stroe, Isabel F. Cruz, 2012, ArXiv.

Towards evaluating complex ontology alignments

Michelle Cheatham, Ondrej Sváb-Zamazal, Catia Pesquita, 2020, Knowl. Eng. Rev..

Where GO is Going and What it Means for Ontology Extension

Catia Pesquita, Francisco M. Couto, 2011, ICBO.

Bringing epidemiology into the Semantic Web

Mário J. Silva, Mário J. Silva, Catia Pesquita, 2012, ICBO.

Ontology-Based Approach for Heterogeneity Analysis of EA Models

João Cardoso, José Luis Borbinha, Catia Pesquita, 2016, Business Process Management Workshops.

Digital preservation of epidemic resources: coupling metadata and ontologies

Mário J. Silva, Catia Pesquita, João D. Ferreira, 2013, iPRES.

AgreementMakerLight 2.0

Emanuel Santos, Isabel F. Cruz, Catia Pesquita, 2014, ISWC 2014.

Tackling the challenges of matching biomedical ontologies

Isabel F. Cruz, Catia Pesquita, Catarina Martins, 2018, J. Biomed. Semant..

Semantic Data Integration

Michelle Cheatham, Catia Pesquita, Catia Pesquita, 2017, Handbook of Big Data Technologies.

An Ontological Matching Approach for Enterprise Architecture Model Analysis

José Luis Borbinha, Catia Pesquita, Marzieh Bakhshandeh, 2016, BIS.

Challenges of evaluating complex alignments

Catia Pesquita, Daniel Faria, Beatriz Lima, 2021, OM@ISWC.

Is there data leakage in protein-protein interaction prediction using knowledge graphs?

Catia Pesquita, Rita Torres Sousa, Sara Silva, 2021, SEMWEB.

Towards Semantic Integration for Explainable Artificial Intelligence in the Biomedical Domain

Catia Pesquita, Catia Pesquita, 2021, HEALTHINF.

Pattern-Guided Association Rule Mining for Complex Ontology Alignment

Catia Pesquita, Daniel Faria, Beatriz Lima, 2021, SEMWEB.

Integrating knowledge graphs for explainable artificial intelligence in biomedicine

Catia Pesquita, Daniel Faria, Marta Contreiras Silva, 2021, OM@ISWC.

VOWLMap: graph-based ontology alignment visualization and editing

Catia Pesquita, Daniel Faria, Ana Guerreiro, 2021, SEMWEB.

Predicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies pdf

Catia Pesquita, Rita T. Sousa, Susana Nunes, 2021, ArXiv.

evoKGsim+: A Framework for Tailoring Knowledge Graph-Based Similarity for Supervised Learning

Catia Pesquita, Rita Torres Sousa, Sara Silva, 2021, ESWC.

Mining GO Annotations for Improving Annotation Consistency

Mario Albrecht, Andreas Schlicker, Catia Pesquita, 2012, PloS one.

AgreementMakerLight : A Scalable Automated Ontology Matching System

Isabel F. Cruz, Catia Pesquita, Daniel Faria, 2014 .

Automatic Background Knowledge Selection for Matching Biomedical Ontologies

Isabel F. Cruz, Catia Pesquita, Daniel Faria, 2014, PloS one.