Hadi Quesneville

发表

Hadi Quesneville, Dominique Anxolabéhère, 2004 .

S-MART, A Software Toolbox to Aid RNA-seq Data Analysis

Matthias Zytnicki, Hadi Quesneville, M. Zytnicki, 2011, PloS one.

Exposing French Agronomic Resources as Linked Open Data

Manuel Ruiz, Hadi Quesneville, Pierre Larmande, 2015, SWAT4LS.

Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Hadi Quesneville, Cyril Pommier, Sophie Durand, 2017 .

Approche orientée-objets de la modélisation de la dynamique des populations d'éléments transposables

Hadi Quesneville, Dominique Anxolabéhère, 1997, LMO.

Database tool GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Hadi Quesneville, Cyril Pommier, Sophie Durand, 2013 .

GNPAnnot Project 2010

Hadi Quesneville, Fabrice Legeai, Valentin Guignon, 2010 .

Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS

Elizabeth Arnaud, Hadi Quesneville, Marie-Angélique Laporte, 2019, Plant phenomics.

Transposable Element Annotation in Completely Sequenced Eukaryote Genomes

Hadi Quesneville, Timothée Flutre, Emmanuelle Permal, 2012 .

Efficient comparison of sets of intervals with NC-lists

Matthias Zytnicki, Hadi Quesneville, YuFei Luo, 2013, Bioinform..

Corrections to “De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue” [Jamilloux et al., Proc. IEEE, vol. 105, no. 3, pp. 474–481, Mar. 2017, DOI: 10.1109/JPROC.2016.2590833]

Hadi Quesneville, Frédéric Choulet, Veronique Jamilloux, 2017, Proceedings of the IEEE.

Towards efficient data integration and knowledge management in the Agronomic domain

Manuel Ruiz, Hadi Quesneville, Pierre Larmande, 2015 .

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Alain Charcosset, Hadi Quesneville, Philippe Lashermes, 2012 .

Data integration in the agronomic domain : national and international data discovery system

Pierre Larmande, Manuel Ruiz, Hadi Quesneville, 2015 .

Detection of transposable elements by their compositional bias

Hadi Quesneville, Dominique Anxolabéhère, Olivier Andrieu, 2004, BMC Bioinformatics.

GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases

Elizabeth Arnaud, Hadi Quesneville, Cyril Pommier, 2016 .

Tedna: a transposable element de novo assembler

Matthias Zytnicki, Hadi Quesneville, Eduard Akhunov, 2014, Bioinform..

Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS)

Hadi Quesneville, Taner Z. Sen, Mario Caccamo, 2020, F1000Research.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Casey M. Bergman, Hadi Quesneville, Dominique Anxolabéhère, 2005, PLoS Comput. Biol..

GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Hadi Quesneville, Cyril Pommier, Sophie Durand, 2013, Database J. Biol. Databases Curation.

Progress in single-access information systems for wheat and rice crop improvement

Rod A Wing, Hadi Quesneville, Armin Scheben, 2019, Briefings Bioinform..

The BioMart community portal: an innovative alternative to large, centralized data repositories

Pietro Liò, Olivier Sallou, Philippe Bardou, 2015, Nucleic Acids Res..

De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue

Hadi Quesneville, Frédéric Choulet, Josquin Daron, 2017, Proceedings of the IEEE.

Discovering and detecting transposable elements in genome sequences

Casey M. Bergman, Hadi Quesneville, H. Quesneville, 2007, Briefings Bioinform..

The genome of the stress-tolerant wild tomato species Solanum pennellii

Takayuki Tohge, Fernando Carrari, Hadi Quesneville, 2014, Nature Genetics.

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

Michael Ashburner, Hadi Quesneville, Dominique Anxolabéhère, 2006, Genome Biology.

Genome-wide studies highlight indirect links between human replication origins and gene regulation

Laurent Duret, Hadi Quesneville, Jean-Charles Cadoret, 2008, Proceedings of the National Academy of Sciences.

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Bernard Henrissat, Hadi Quesneville, Paul S. Dyer, 2011, PLoS genetics.

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Graziano Pesole, Thomas Schiex, Bernard Henrissat, 2008, Nature Biotechnology.

Understanding Brassicaceae evolution through ancestral genome reconstruction

Hadi Quesneville, Hugues Roest Crollius, Alexandra Louis, 2015, Genome Biology.

In search of lost trajectories

Hadi Quesneville, Timothée Flutre, T. Flutre, 2011, Mobile genetic elements.

Genome Sequence of Aedes aegypti, a Major Arbovirus Vector

Evgeny M. Zdobnov, Ian T. Paulsen, Jonathan Crabtree, 2007, Science.

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Bernard Henrissat, Stefano Ghignone, Hadi Quesneville, 2010, Nature.

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

Pari Skamnioti, Sarah J. Gurr, Giovanni Montana, 2010, Science.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

Vincent Moulton, Hadi Quesneville, Thomas Mock, 2017, Nature.

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Hadi Quesneville, Cyril Pommier, Sophie Durand, 2018, Genome Biology.

Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots".

Hadi Quesneville, Vincent Colot, Christine Camilleri, 2005, Genome research.

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Hadi Quesneville, Franck Salin, Karine Labadie, 2016, Molecular ecology resources.

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anthony Bretaudeau, Hadi Quesneville, Adriana Alberti, 2017, Scientific Reports.

Structural and functional partitioning of bread wheat chromosome 3B

Hadi Quesneville, Adriana Alberti, Patrick Wincker, 2014, Science.

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

Matthias Zytnicki, Hadi Quesneville, Isabelle Luyten, 2013, Proceedings of the National Academy of Sciences.

Developing data interoperability using standards: A wheat community use case.

Ute Baumann, Clement Jonquet, Patrice Buche, 2017, F1000Research.

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

Mathieu Blanchette, Wei Wang, Hadi Quesneville, 2013, Nature Genetics.

Developing data interoperability using standards: A wheat community use case

Ute Baumann, Clement Jonquet, Patrice Buche, 2017, F1000Research.

Oak genome reveals facets of long lifespan

Olivier Panaud, Hadi Quesneville, Franck Salin, 2018, Nature Plants.

Formation of plant metabolic gene clusters within dynamic chromosomal regions

Hadi Quesneville, Anna-Sophie Fiston-Lavier, Anna-Sophie Fiston-Lavier, 2011, Proceedings of the National Academy of Sciences.