Chanson J. Brumme

发表

Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

David Heckerman, Carl Myers Kadie, Bruce D. Walker, 2008, PLoS Comput. Biol..

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control

Paul J. McLaren, Jacques Fellay, Amalio Telenti, 2015, bioRxiv.

HIV Subtype and Nef-Mediated Immune Evasion Function Correlate with Viral Reservoir Size in Early-Treated Individuals

Oliver Laeyendecker, Zabrina L. Brumme, Chanson J. Brumme, 2019, Journal of Virology.

Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters

David Heckerman, Carl M. Kadie, Elena Losina, 2010, Journal of Virology.

Correlates of Protective Cellular Immunity Revealed by Analysis of Population-Level Immune Escape Pathways in HIV-1

David Heckerman, Jennifer Listgarten, Nico Pfeifer, 2012, Journal of Virology.

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing

Jeffrey B. Joy, Richard H. Liang, Rosemary M. McCloskey, 2014, Nucleic acids research.

Marked Epitope- and Allele-Specific Differences in Rates of Mutation in Human Immunodeficiency Type 1 (HIV-1) Gag, Pol, and Nef Cytotoxic T-Lymphocyte Epitopes in Acute/Early HIV-1 Infection

David Heckerman, Anthony D. Kelleher, Zabrina L. Brumme, 2008, Journal of Virology.

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

David W. Haas, David Heckerman, Carl M. Kadie, 2009, PloS one.

HLA-B57/B*5801 Human Immunodeficiency Virus Type 1 Elite Controllers Select for Rare Gag Variants Associated with Reduced Viral Replication Capacity and Strong Cytotoxic T-Lymphotye Recognition

Bin Li, Zabrina L. Brumme, Christian Brander, 2008, Journal of Virology.

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

Huldrych F. Günthard, Michael C. Zody, Qiandong Zeng, 2012, PLoS pathogens.