Jie Zheng

发表

Computational cell fate modelling for discovery of rewiring in apoptotic network for enhanced cancer drug sensitivity

Fan Zhang, Sourav S. Bhowmick, Shital K. Mishra, 2015, BMC Systems Biology.

SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets

Hui Liu, Jing Guo, Jie Zheng, 2015, Nucleic Acids Res..

Integration of genomic and epigenomic features to predict meiotic recombination hotspots in human and mouse

Jing Li, Chee Keong Kwoh, Teresa M. Przytycka, 2012, BCB.

Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression

Teresa M. Przytycka, Jie Zheng, Raheleh Salari, 2012, PLoS Comput. Biol..

Generalized logical model based on network topology to capture the dynamical trends of cellular signaling pathways

Fan Zhang, Hui Liu, Teresa M. Przytycka, 2016, BMC Systems Biology.

Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast

Chee Keong Kwoh, Xiaoli Li, Jie Zheng, 2014, BMC Systems Biology.

Extracting rate changes in transcriptional regulation from MEDLINE abstracts

Kuiyu Chang, Guangxia Li, Jagath C. Rajapakse, 2014, BMC Bioinformatics.

SimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks

David Zhang, Teresa M. Przytycka, Jie Zheng, 2009, Bioinform..

Reliable and fast estimation of recombination rates by convergence diagnosis and parallel Markov Chain Monte Carlo

Chee Keong Kwoh, Peng Yang, Rui Fan, 2014, TCBB.

Deciphering histone code of transcriptional regulation in malaria parasites by large-scale data mining

Stefano Lonardi, Jie Zheng, Haifen Chen, 2014, Comput. Biol. Chem..

Assignment of orthologous genes via genome rearrangement

Tao Jiang, Xin Chen, Stefano Lonardi, 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Integration of Epigenetic Data in Bayesian Network Modeling of Gene Regulatory Network

Jagath C. Rajapakse, Jie Zheng, Iti Chaturvedi, 2011, PRIB.

CUDAGRN: Parallel Speedup of Inferring Large Gene Regulatory Networks from Expression Data Using Random Forest

Rui Fan, Jagath C. Rajapakse, Jie Zheng, 2014, PRIB.

NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential

Feng Lin, Jing Guo, Xiaomeng Zhang, 2017, Bioinform..

Syn-Lethality: An Integrative Knowledge Base of Synthetic Lethality towards Discovery of Selective Anticancer Therapies

Fan Zhang, Shital K. Mishra, Jie Zheng, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Efficient selection of unique and popular oligos for large EST databases

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2004, Bioinform..

IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking

Chee Keong Kwoh, Thuy-Diem Nguyen, Jie Zheng, 2014, BMC Bioinformatics.

LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination hotspots by analysis of DNA sequence polymorphisms

Chee Keong Kwoh, Peng Yang, Jing Guo, 2014, BMC Bioinformatics.

Introduction to the CSBio2014 special issue

Xiaoli Li, Jie Zheng, 2015, J. Bioinform. Comput. Biol..

Inferring Time-Delayed Gene Regulatory Networks Using Cross-Correlation and Sparse Regression

Roy E. Welsch, Mahesan Niranjan, Jagath C. Rajapakse, 2013, ISBRA.

Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests Ensemble

Jagath C. Rajapakse, Jie Zheng, Piyushkumar A. Mundra, 2013, PRIB.

Structural analysis of the novel influenza A (H7N9) viral Neuraminidase interactions with current approved neuraminidase inhibitors Oseltamivir, Zanamivir, and Peramivir in the presence of mutation R289K

Chee Keong Kwoh, Jie Zheng, Chinh Tran To Su, 2013, BMC Bioinformatics.

Computing the Assignment of Orthologous Genes via Genome Rearrangement

Tao Jiang, Xin Chen, Stefano Lonardi, 2005, APBC.

Drug-target interaction prediction by learning from local information and neighbors

Chee Keong Kwoh, Peng Yang, Xiaoli Li, 2013, Bioinform..

Globalized bipartite local model for drug-target interaction prediction

Chee Keong Kwoh, Peng Yang, Xiaoli Li, 2012, BIOKDD '12.

Data-driven prediction of cancer cell fates with a nonlinear model of signaling pathways

Fan Zhang, Chee Keong Kwoh, Jie Zheng, 2014, BCB.

Meta-analysis of Genomic and Proteomic Features to Predict Synthetic Lethality of Yeast and Human Cancer

Fan Zhang, Chee Keong Kwoh, Xiaoli Li, 2013, BCB.

Gene Regulatory Networks from Gene Ontology

Kuiyu Chang, Jung-jae Kim, Jagath C. Rajapakse, 2013, ISBRA.

Prediction of Trans-regulators of Recombination Hotspots in Mouse Genome

Jing Li, Chee Keong Kwoh, Teresa M. Przytycka, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals

Teresa M. Przytycka, Jie Zheng, Igor B. Rogozin, 2007, RECOMB-CG.

Phylogenetic Tree based Method for Uncovering Co-mutational Site-pairs in Influenza Viruses

Chee Keong Kwoh, Jie Zheng, Rui Yin, 2017, BCB.

Computational identification of physicochemical signatures for host tropism of influenza A virus

Chee Keong Kwoh, Jie Zheng, Rui Yin, 2018, J. Bioinform. Comput. Biol..

Single-cell transcriptional analysis to uncover regulatory circuits driving cell fate decisions in early mouse development

Jing Guo, Mahesan Niranjan, Shital K. Mishra, 2015, Bioinform..

Efficient Selection of Unique and Popular Oligos for Large EST Databases

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2003, CPM.

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2006, BMC Bioinformatics.

HopLand: single-cell pseudotime recovery using continuous Hopfield network-based modeling of Waddington’s epigenetic landscape

Jing Guo, Jie Zheng, Jie Zheng, 2017, Bioinform..

NetPipe: a network-based pipeline for discovery of genes and protein complexes regulating meiotic recombination hotspots

Chee Keong Kwoh, Xiaoli Li, Jie Zheng, 2012, BCB.

The crosstalk between EGF, IGF, and Insulin cell signaling pathways - computational and experimental analysis

David Zhang, Teresa M. Przytycka, Jie Zheng, 2009, BMC Systems Biology.

Predicting essential genes and synthetic lethality via influence propagation in signaling pathways of cancer cell fates

Fan Zhang, Chee Keong Kwoh, Xiaoli Li, 2015, J. Bioinform. Comput. Biol..

Sig2GRN: a software tool linking signaling pathway with gene regulatory network for dynamic simulation

Fan Zhang, Runsheng Liu, Jie Zheng, 2016, BMC Systems Biology.

Discovery of repetitive patterns in DNA with accurate boundaries

Stefano Lonardi, Jie Zheng, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

Machine Learning-Enabled Repurposing and Design of Antifouling Polymer Brushes

Jie Zheng, Yonglan Liu, Dong Zhang, 2021 .

Surface Hydration: Principles and Applications Toward Low-fouling/nonfouling Biomaterials

Jie Zheng, Chao Zhao, Lingyan Li, 2010 .

Bulk heterojunction perovskite hybrid solar cells with large fill factor

Jie Zheng, Xiong Gong, Pengcheng Du, 2015 .

Interfacial interaction and lateral association of cross-seeding assemblies between hIAPP and rIAPP oligomers.

Jie Zheng, Mingzhen Zhang, Yung Chang, 2015, Physical chemistry chemical physics : PCCP.

Dual Salt- and Thermoresponsive Programmable Bilayer Hydrogel Actuators with Pseudo-Interpenetrating Double-Network Structures.

Xiaomin He, Jie Zheng, Jintao Yang, 2018, ACS applied materials & interfaces.

Non-selective ion channel activity of polymorphic human islet amyloid polypeptide (amylin) double channels.

Jie Zheng, Ayyalusamy Ramamoorthy, Rundong Hu, 2014, Physical chemistry chemical physics : PCCP.

Binding characteristics between polyethylene glycol (PEG) and proteins in aqueous solution.

Jie Zheng, Hong Chen, Weifeng Lin, 2014, Journal of materials chemistry. B.

Molecular simulation aspects of amyloid peptides at membrane interface.

Yan Sun, Lijian Xu, Jie Zheng, 2018, Biochimica et biophysica acta. Biomembranes.

Cross-sequence interactions between human and rat islet amyloid polypeptides.

Kunal Patel, Jie Zheng, Mingzhen Zhang, 2014, Langmuir : the ACS journal of surfaces and colloids.

A Novel Design Strategy for Fully Physically Linked Double Network Hydrogels with Tough, Fatigue Resistant, and Self‐Healing Properties

Jie Zheng, Lin Zhu, Lin Zhu, 2015 .

Dual physically crosslinked double network hydrogels with high toughness and self-healing properties.

Jie Zheng, Qian Yang, Shijun Long, 2017, Soft matter.

Structural and energetic insight into the cross-seeding amyloid assemblies of human IAPP and rat IAPP.

Yan Sun, Jie Zheng, Mingzhen Zhang, 2014, The journal of physical chemistry. B.

Dual functionality of antimicrobial and antifouling of poly(N-hydroxyethylacrylamide)/salicylate hydrogels.

Jie Zheng, Xiaosi Li, Xiong Gong, 2013, Langmuir : the ACS journal of surfaces and colloids.

Mimicking the binding and unbinding of Fe3+ with transferrin using a single biomimetic nanochannel.

Jie Zheng, Yung Chang, Xiaosi Li, 2013, Chemical communications.

Salt-Responsive Bilayer Hydrogels with Pseudo-Double-Network Structure Actuated by Polyelectrolyte and Antipolyelectrolyte Effects.

Yin Yang, Hong Chen, Jie Zheng, 2017, ACS applied materials & interfaces.

Effect of film thickness on the antifouling performance of poly(hydroxy-functional methacrylates) grafted surfaces.

Jie Zheng, Qiuming Yu, Qiuming Wang, 2011, Langmuir : the ACS journal of surfaces and colloids.

Design of novel lanthanide-doped core-shell nanocrystals with dual up-conversion and down-conversion luminescence for anti-counterfeiting printing.

Lijian Xu, Changfan Zhang, Jie Zheng, 2019, Dalton transactions.

Fundamentals of double network hydrogels.

Jie Zheng, Lin Zhu, Lin Zhu, 2015, Journal of materials chemistry. B.

Fundamentals of cross-seeding of amyloid proteins: an introduction.

Jie Zheng, Mingzhen Zhang, Yung Chang, 2019, Journal of materials chemistry. B.

Water-soluble CdTe quantum dots as an anode interlayer for solution-processed near infrared polymer photodetectors.

Jie Zheng, Xiong Gong, Matthew L Becker, 2013, Nanoscale.