Arnab Pain

发表

SVAMP: sequence variation analysis, maps and phylogeny

Taane G. Clark, Lailatul Hidayah, Mark D. Preston, 2014, Bioinform..

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis

Francesc Coll, Ruth McNerney, Taane G. Clark, 2015, BMC Bioinformatics.

READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation

Mamoon Rashid, Raeece Naeem, Arnab Pain, 2012, Bioinform..

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

Francesc Coll, Ruth McNerney, Taane G. Clark, 2014, Nature Communications.

A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses

John R Yates, Neil Hall, Kim Rutherford, 2005, Science.

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan

Francesc Coll, Ruth McNerney, Taane G. Clark, 2015, PloS one.

Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry

Neil Hall, Robert W. Sauerwein, Matthias Mann, 2002, Nature.

Functional pangenome analysis points to protein E, a pathogenicity determinant in SARS, as a therapeutic target for COVID-19 complications

Maxat Kulmanov, Takashi Gojobori, Intikhab Alam, 2020 .

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

Ulrike Böhme, Martin Hunt, Oliver Billker, 2014, BMC Biology.

The genomic variation landscape of globally-circulating clades of SARS-CoV-2 defines a genetic barcoding scheme

Arnab Pain, Stefan T. Arold, A. Pain, 2020, bioRxiv.

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites

Diego Miranda-Saavedra, Neil D Rawlings, Chris Bowler, 2015, eLife.

Defining the protein interaction network of human malaria parasite Plasmodium falciparum.

Timothy Ravasi, Arnab Pain, T. Ravasi, 2012, Genomics.

Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance

Douglas E. V. Pires, Francesc Coll, Ruth McNerney, 2016, BMC Medicine.

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

Martin Hunt, Peter J A Cock, Isheng J Tsai, 2014, Genome Biology.

Genome-Wide Transposon Mutagenesis Indicates that Mycobacterium marinum Customizes Its Virulence Mechanisms for Survival and Replication in Different Hosts

Douwe Molenaar, Gemma C. Langridge, Thomas D. Otto, 2015, Infection and Immunity.

Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2

Maxat Kulmanov, Takashi Gojobori, Intikhab Alam, 2020, Frontiers in Cellular and Infection Microbiology.

Recombinations in Staphylococcal Cassette Chromosome mec Elements Compromise the Molecular Detection of Methicillin Resistance in Staphylococcus aureus

Taane G. Clark, Olaf Piepenburg, Arnab Pain, 2014, PloS one.

Adaptation of the genetically tractable malaria pathogen Plasmodium knowlesi to continuous culture in human erythrocytes

Yung Shwen Ho, Arnab Pain, Robert W Moon, 2012, Proceedings of the National Academy of Sciences.

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

Francesc Coll, Ruth McNerney, Kim Mallard, 2015, Genome Medicine.

Genome of the Host-Cell Transforming Parasite Theileria annulata Compared with T. parva

Neil Hall, Sam Griffiths-Jones, Neil D Rawlings, 2005, Science.

Comparative Genomics of the Apicomplexan Parasites Toxoplasma gondii and Neospora caninum: Coccidia Differing in Host Range and Transmission Strategy

David S. Roos, John Parkinson, Alexander J. Trees, 2012, PLoS pathogens.

Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia.

Arnab Pain, Miroslav Oborník, A. Pain, 2013, Molecular biology and evolution.

New Initiatives for Management of Red Palm Weevil Threats to Historical Arabian Date Palms*

Michael P. Parrella, Abdulrahman S. Aldawood, R. W. Mankin, 2011 .

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans.

Marie-Adèle Rajandream, Michael A Quail, Arnab Pain, 2009, Genome research.

Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features

Tareq B. Malas, Thomas D. Otto, Raeece Naeem, 2015, PloS one.

The Systematic Functional Analysis of Plasmodium Protein Kinases Identifies Essential Regulators of Mosquito Transmission

Alex Bateman, Ulrike Böhme, Oliver Billker, 2010, Cell host & microbe.