Petri Törönen

发表

AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination

Liisa Holm, Alan Medlar, Petri Törönen, 2018, Nucleic Acids Res..

Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function

Liisa Holm, Petri Törönen, Pekka Marttinen, 2009, BMC Bioinformatics.

POXO: a web-enabled tool series to discover transcription factor binding sites

Liisa Holm, Petri Törönen, Päivi Rosenström, 2006, Nucleic Acids Res..

Bayesian search of functionally divergent protein subgroups and their function specific residues

Jukka Corander, Liisa Holm, Petri Törönen, 2006, Bioinform..

Robust multi-group gene set analysis with few replicates

Liisa Holm, Petri Törönen, Pashupati P. Mishra, 2016, BMC Bioinformatics.

Generation of Gene Ontology benchmark datasets with various types of positive signal

Liisa Holm, Petri Törönen, Petri Pehkonen, 2009, BMC Bioinformatics.

Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions

Petri Törönen, Garry Wong, Petri Pehkonen, 2010, IEEE ACM Trans. Comput. Biol. Bioinform..

Analysis and visualization of gene expression data using Self-Organizing Maps

Jarkko Venna, Samuel Kaski, Petri Törönen, 2002, Neural Networks.

Gene set analysis: limitations in popular existing methods and proposed improvements

Liisa Holm, Petri Törönen, Yrjö Leino, 2014, Bioinform..

Theme discovery from gene lists for identification and viewing of multiple functional groups

Petri Törönen, Garry Wong, Petri Pehkonen, 2005, BMC Bioinformatics.

Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries?

Petri Törönen, Pauli J. Ojala, Jukka Partanen, 2009, J. Biomed. Informatics.

Trustworthiness and metrics in visualizing similarity of gene expression

Jarkko Venna, Samuel Kaski, Petri Törönen, 2003, BMC Bioinformatics.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment

Liisa Holm, Petri Törönen, Patrik Koskinen, 2015, Bioinform..

PANNZER2: a rapid functional annotation web server

Liisa Holm, Alan Medlar, Petri Törönen, 2018, Nucleic Acids Res..

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

Selection of informative clusters from hierarchical cluster tree with gene classes

Petri Törönen, P. Törönen, 2004, BMC Bioinformatics.

GOParGenPy: a high throughput method to generate Gene Ontology data matrices

Liisa Holm, Ajay Kumar, Petri Törönen, 2013, BMC Bioinformatics.

A New Approach to Multilabel Stratified Cross Validation with Application to Large and Sparse Gene Ontology Datasets pdf

Liisa Holm, Petri Törönen, Henri Tiittanen, 2021, ArXiv.

Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana

Liisa Holm, Petri Törönen, L. Holm, 2006, Nucleic acids research.

Brain‐derived neurotrophic factor signaling modifies hippocampal gene expression during epileptogenesis in transgenic mice

Asla Pitkänen, Petri Törönen, Juha E. A. Knuuttila, 2004, The European journal of neuroscience.

Effects of Antidepressant Drug Imipramine on Gene Expression in Rat Prefrontal Cortex

Petri Törönen, Juha E. A. Knuuttila, E. Castrén, 2004, Neurochemical Research.

Antipsychotic drug treatment induces differential gene expression in the rat cortex

Petri Törönen, E. Castrén, P. Törönen, 2002, Journal of neurochemistry.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.