Sven Bergmann

发表

Connecting Points by Smooth Connection Functions Defines Shapes in the Smoothest Possible Way

Alex Alon, Sven Bergmann, Alex Alon, 2011, SHAPES.

MONET: a toolbox integrating top-performing methods for network modularisation

Daniel Marbach, Sergio Gómez, Mattia Tomasoni, 2019, bioRxiv.

Set-up of a Unit-Selection Synthesis with a Prominent Voice

Sebastian Möller, Sven Bergmann, Ralf Dragon, 2006, LREC.

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics

Daniel Marbach, Sven Bergmann, Zoltán Kutalik, 2016, PLoS Comput. Biol..

Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy

Sven Bergmann, Gabi Kastenmüller, Nele Friedrich, 2017, PLoS Comput. Biol..

Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility

Daniel Marbach, Sven Bergmann, Zoltán Kutalik, 2017, PLoS Comput. Biol..

EuroDia: a beta-cell gene expression resource

Ioannis Xenarios, Sven Bergmann, Robin Liechti, 2010, Database J. Biol. Databases Curation.

FastEpistasis: a high performance computing solution for quantitative trait epistasis

Ioannis Xenarios, Sven Bergmann, Thierry Schüpbach, 2010, Bioinform..

MONET: a toolbox integrating top-performing methods for network modularization

Daniel Marbach, Sergio Gómez, Mattia Tomasoni, 2019, bioRxiv.

Challenges and prospects in the analysis of large-scale gene expression data

Sven Bergmann, Jan Ihmels, S. Bergmann, 2004, Briefings Bioinform..

A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes

Sven Bergmann, Aitana Morton de Lachapelle, S. Bergmann, 2011, SHAPES.

Defining transcription modules using large-scale gene expression data

Sven Bergmann, Naama Barkai, Jan Ihmels, 2004, Bioinform..

From Modules to Models: Advanced Analysis Methods for Large-Scale Data

Sven Bergmann, 2009 .

ExpressionView - an interactive viewer for modules identified in gene expression data

Sven Bergmann, Andreas Lüscher, Gábor Csárdi, 2010, Bioinform..

Modular analysis of gene expression data with R

Sven Bergmann, Gábor Csárdi, Zoltán Kutalik, 2010, Bioinform..

A method for battery management and battery management system

Sven Bergmann, Florian Follath, 2013 .

Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome

Sven Bergmann, Gábor Csárdi, Alexandre Reymond, 2011, PLoS Comput. Biol..

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human

Sven Bergmann, Marc Robinson-Rechavi, Barbara Piasecka, 2012, Bioinform..

Iterative Estimation of Rigid-Body Transformations

Aude Billard, Sven Bergmann, Micha Hersch, 2011, Journal of Mathematical Imaging and Vision.

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Christian von Mering, Ron D. Appel, Evgeny M. Zdobnov, 2014, Nucleic Acids Res..

Battery system comprising at least a battery module having a plurality of strand-switchable coupling units battery modules and methods of operation of the battery system

Sven Bergmann, Markus Hald, 2013 .

DreamDMI: a tool for Disease Module Identification in molecular networks

Daniel Marbach, Mattia Tomasoni, Sven Bergmann, 2019 .

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases

Daniel Marbach, Manolis Kellis, Sven Bergmann, 2016, Nature Methods.

Iterative signature algorithm for the analysis of large-scale gene expression data.

Sven Bergmann, Naama Barkai, Jan Ihmels, 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

A modular approach for integrative analysis of large-scale gene-expression and drug-response data

Sven Bergmann, Zoltán Kutalik, Jacques S Beckmann, 2008, Nature Biotechnology.

Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality

Christian Gieger, Uwe Völker, Tim Kacprowski, 2015, PLoS genetics.

Re-examining the Stability of the Bicoid Morphogen Gradient

Sven Bergmann, Zvi Tamari, Naama Barkai, 2008, Cell.

Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy

Sebastiaan Overeem, Poul Jennum, Johannes Mathis, 2010, Nature Genetics.

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Thomas Meitinger, Inês Barroso, Peter Kraft, 2010, Nature Genetics.

Methods for testing association between uncertain genotypes and quantitative traits.

Sven Bergmann, Zoltán Kutalik, Vincent Mooser, 2011, Biostatistics.

Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging

Janna Hastings, Sven Bergmann, Nicolas Rodriguez, 2019, Front. Mol. Biosci..

Genome-Wide Association and Functional Follow-Up Reveals New Loci for Kidney Function

Sylvia Stracke, Alex Doney, Yurii S. Aulchenko, 2012, PLoS genetics.

Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.

Luigi Ferrucci, Sven Bergmann, Vincent Mooser, 2008, American journal of human genetics.

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

Sven Bergmann, Itai Yanai, Judith Berman, 2005, Science.

Genome-Wide Meta-Analysis for Serum Calcium Identifies Significantly Associated SNPs near the Calcium-Sensing Receptor (CASR) Gene

Luigi Ferrucci, Sven Bergmann, Zoltán Kutalik, 2010, PLoS genetics.

Genome-Wide Association Study of Metabolic Traits Reveals Novel Gene-Metabolite-Disease Links

Christoph Steinbeck, Edgard Morya, Sven Bergmann, 2014, PLoS genetics.

A higher mutational burden in females supports a "female protective model" in neurodevelopmental disorders.

Sven Bergmann, Niklas Krumm, Bradley P. Coe, 2014, American journal of human genetics.

Meta-Analysis of 28,141 Individuals Identifies Common Variants within Five New Loci That Influence Uric Acid Concentrations

Christian Gieger, Thomas Meitinger, Uwe Völker, 2009, PLoS genetics.

Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort

C. V. Jongeneel, Sven Bergmann, Zoltán Kutalik, 2012, BMC Genomics.

CUBN is a gene locus for albuminuria.

Sylvia Stracke, Ming-Huei Chen, Luigi Ferrucci, 2011, Journal of the American Society of Nephrology : JASN.

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Thomas Meitinger, Inês Barroso, Peter Kraft, 2011, Nature Genetics.

Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes

Sylvia Stracke, Christian Gieger, Joshua C. Denny, 2015, Diabetes.

Genetic Variants in Novel Pathways Influence Blood Pressure and Cardiovascular Disease Risk

Christian Gieger, Xiaofeng Zhu, Paolo Vineis, 2011, Nature.

Pom 1 gradient buffering through intermolecular autophosphorylation

Sven Bergmann, Payal Bhatia, Sophie G. Martin, 2015 .

Directional dominance on stature and cognition in diverse human populations

Laura J. Scott, Claude Bouchard, Christian Gieger, 2015, Nature.

Genome-wide physical activity interactions in adiposity. A meta-analysis of 200,452 adults

Claude Bouchard, Christian Gieger, Tuija Tammelin, 2017 .

New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk

Christian Gieger, Alex Doney, Inês Barroso, 2010, Nature Genetics.

A genetic risk score combining 32 SNPs is associated with body mass index and improves obesity prediction in people with major depressive disorder

Sven Bergmann, Florian Holsboer, Bertram Müller-Myhsok, 2015, BMC Medicine.

Discovery and fine mapping of serum protein loci through transethnic meta-analysis.

Christian Gieger, Yusuke Nakamura, Luigi Ferrucci, 2012, American journal of human genetics.

Appendix: Supplementary results

Sven Bergmann, Zoltán Kutalik, Jacques S. Beckmann, 2015, Clinical Psychology Forum.

Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure

Christian Gieger, Jingyuan Fu, Thomas Meitinger, 2011, Nature Genetics.

Comparison of Strategies to Detect Epistasis from eQTL Data

Ioannis Xenarios, Sven Bergmann, Zoltán Kutalik, 2011, PloS one.

Integration of genome-wide association studies with biological knowledge identifies six novel genes related to kidney function.

Sylvia Stracke, Christian Gieger, Alex Doney, 2012, Human molecular genetics.

Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study.

Sven Bergmann, Thomas Berg, Zoltán Kutalik, 2010, Gastroenterology.

A principal component meta-analysis on multiple anthropometric traits identifies novel loci for body shape

Claude Bouchard, Christian Gieger, Joel Eriksson, 2016, Nature communications.

Comparative modular analysis of gene expression in vertebrate organs

Sven Bergmann, Zoltán Kutalik, Julien Roux, 2012, BMC Genomics.

WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series

Rob Jelier, Janna Hastings, Christoph Kaleta, 2017, Worm.

Common variants near MC4R are associated with fat mass, weight and risk of obesity

Subhajyoti De, Inês Barroso, Philippe Froguel, 2008, Nature Genetics.

Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies

Christian Gieger, Inês Barroso, Peter Kraft, 2010, Nature Genetics.