Luke V. Rasmussen

发表

A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments

Joshua C. Denny, Jyotishman Pathak, Abel N. Kho, 2018, J. Am. Medical Informatics Assoc..

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution

Christopher G. Chute, Joshua C. Denny, Jyotishman Pathak, 2015, MedInfo.

Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network

Pedro J. Caraballo, Peggy L. Peissig, Justin Starren, 2019, J. Am. Medical Informatics Assoc..

An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution

Joshua C. Denny, Jyotishman Pathak, Guoqian Jiang, 2016, AMIA.

Importance of multi-modal approaches to effectively identify cataract cases from electronic health records

Lin Chen, Joshua C. Denny, Jyotishman Pathak, 2012, J. Am. Medical Informatics Assoc..

Qualitative evaluation of three phenotype information models to find methotrexate liver injury

Jie Xu, Joshua C. Denny, Jyotishman Pathak, 2014, American Medical Informatics Association Annual Symposium.

The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs

Joshua C. Denny, Jyotishman Pathak, William Thompson, 2017, AMIA.

What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support

Chunhua Weng, Eneida A. Mendonça, David A. Hanauer, 2014, AMIA.

Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks

Jessica S. Ancker, Guoqian Jiang, Jennifer A. Pacheco, 2019, J. Biomed. Informatics.

An ancillary genomics system to support the return of pharmacogenomic results

Justin Starren, Carl Christensen, Jennifer A. Pacheco, 2019, J. Am. Medical Informatics Assoc..

A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project

Christopher G. Chute, Joshua C. Denny, Marc S. Williams, 2014, AMIA.

Harmonizing Clinical Sequencing and Interpretation for the eMERGE III Network.

Robert C. Green, Keith Marsolo, Casey Overby Taylor, 2019, American journal of human genetics.

Developing a portable natural language processing based phenotyping system

Himanshu Sharma, Yizhen Zhang, Yuan Luo, 2018, BMC Medical Informatics and Decision Making.

The Genomic Medical Record and Omic Ancillary Systems

Casey Overby Taylor, Justin Starren, Luke V. Rasmussen, 2019, Health Informatics.

A Modular Architecture for Electronic Health Record-Driven Phenotyping

Joshua C. Denny, Jyotishman Pathak, Guoqian Jiang, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Facilitating phenotype transfer using a common data model

George Hripcsak, Chunhua Weng, Joshua C. Denny, 2019, J. Biomed. Informatics.

A Prototype for Executable and Portable Electronic Clinical Quality Measures Using the KNIME Analytics Platform

Joshua C. Denny, Jyotishman Pathak, William K. Thompson, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Identification of Predictive Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks pdf

Fei Wang, Jessica S. Ancker, Yuan Luo, 2019, ArXiv.

Classifying Clinical Trial Eligibility Criteria to Facilitate Phased Cohort Identification Using Clinical Data Repositories

James J. Cimino, Luke V. Rasmussen, Amy Y. Wang, 2017, AMIA.

Grouping and Translating Value Sets

Garima Sharma, Justin Starren, Luke V. Rasmussen, 2012, AMIA.

Analysis Manager: A Reproducible Research Tool for Generating Dynamic Documents using Microsoft Word

Luke V. Rasmussen, Leah Welty, Abigail S. Baldridge, 2016 .

Spec2Harv: Converting Spectrum output to HARVEST input

Luke V. Rasmussen, Eric J. Gustafson, Larry A. Leefers, 2003 .

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

George Hripcsak, Christopher G. Chute, Yuan Luo, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study

Jessica S. Ancker, Jyotishman Pathak, Guoqian Jiang, 2019, AMIA.

Data Collection Methods to Support a Multi-State Practice Care Transformation Network

Abel N. Kho, Luke V. Rasmussen, Kathryn L. Jackson, 2016, CRI.

Seamless Integration of Patient Reported Outcomes Assessments into the EHR Workflow

Justin Starren, Luke V. Rasmussen, Michael Bass, 2016, CRI.

Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network

Pedro J. Caraballo, Luke V. Rasmussen, Josh F. Peterson, 2016, AMIA.

Challenges to electronic clinical quality measurement using third-party platforms in primary care practices: the healthy hearts in the heartland experience

Abel N. Kho, Joshua E. Richardson, Luke V. Rasmussen, 2019, JAMIA open.

Automatic identification and extraction of design patterns of EHR-driven phenotyping algorithms

Yuan Luo, Justin Starren, Luke V. Rasmussen, 2016, AMIA.

Design patterns for the development of electronic health record-driven phenotype extraction algorithms

Gerard Tromp, Joshua C. Denny, Jyotishman Pathak, 2014, J. Biomed. Informatics.

Desiderata for computable representations of electronic health records-driven phenotype algorithms

Paul A. Harris, Gerard Tromp, Jie Xu, 2015, J. Am. Medical Informatics Assoc..

Evaluation of Existing Phenotype Authoring Tools for Clinical Research

Jie Xu, Joshua C. Denny, Jyotishman Pathak, 2014, AMIA.

The genomic CDS sandbox: An assessment among domain experts

Kensaku Kawamoto, Karen Eilbeck, Marc S. Williams, 2016, J. Biomed. Informatics.

An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms

Joshua C. Denny, Jyotishman Pathak, Abel N. Kho, 2012, AMIA.

Integrating Research Recruitment into a Clinical Patient Portal

Justin Starren, Carl Christensen, Luke V. Rasmussen, 2012, AMIA.

Use of the popHealth Open-Source Quality Measure Engine to Support Cardiovascular Care at Small- and Medium-Sized Practices

Abel N. Kho, Luke V. Rasmussen, Theresa L. Walunas, 2017, AMIA.

Portable Phenotyping System: A Portable Machine-Learning Approach to i2b2 Obesity Challenge

Himanshu Sharma, Yizhen Zhang, Yuan Luo, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Design and Implementation of an Ancillary Genomics System for the Return of Pharmacogenetic Results

Justin Starren, Carl Christensen, Jennifer A. Pacheco, 2016, AMIA.

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability

Paul A. Harris, Gerard Tromp, Joshua C. Denny, 2016, J. Am. Medical Informatics Assoc..

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution

Jie Xu, Christopher G. Chute, Joshua C. Denny, 2016, J. Biomed. Informatics.

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record

Christopher G. Chute, Marc S. Williams, Peggy L. Peissig, 2015, J. Am. Medical Informatics Assoc..

Using Collaboration Networks to Visualize Patterns in Clinical Trial Recruitment

Justin Starren, Luke V. Rasmussen, Timothy M. Herr, 2016, CRI.

Open Source Workflow Tools for Electronic Health Record Based Phenotyping Algorithms

Abel N. Kho, William K. Thompson, Jennifer A. Pacheco, 2012, AMIA.

Reproducibility of Health Care Datasets

Luke V. Rasmussen, Daniel H. Schneider, Nathan D. Sisterson, 2014, AMIA.

Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants

Luke V. Rasmussen, Paul R. Dexter, Josh F. Peterson, 2019, AMIA.

Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME

Joshua C. Denny, Jyotishman Pathak, William K. Thompson, 2015, AMIA.

Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository

Joshua C. Denny, Jyotishman Pathak, Guoqian Jiang, 2017, AMIA.

Development of an optical character recognition pipeline for handwritten form fields from an electronic health record

Peggy L. Peissig, Justin Starren, Luke V. Rasmussen, 2012, J. Am. Medical Informatics Assoc..

Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools

Jie Xu, Joshua C. Denny, Jyotishman Pathak, 2015, AMIA.

PhEMA: Phenotype Modeling, Sharing and Execution Architecture

Joshua C. Denny, Jyotishman Pathak, William K. Thompson, 2015, AMIA.

Improving Workflow and Security: the Marshfield Data Submission Tracking System

Peggy L. Peissig, Justin Starren, Tuan Nguyen, 2005 .

Rethinking the "Honest Broker" in the Changing Face of Security and Privacy

Bradley Malin, Andrew D. Boyd, Luke V. Rasmussen, 2012, American Medical Informatics Association Annual Symposium.

Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network

Joshua C. Denny, Chunhua Weng, Wei-Qi Wei, 2019, J. Biomed. Informatics.

Challenges impacting data collection from Electronic Health Record (EHR) Systems in Small and Medium sized practices in the Midwest

Abel N. Kho, Luke V. Rasmussen, Kathryn L. Jackson, 2017, AMIA.

Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study

Jie Xu, Christopher G. Chute, Joshua C. Denny, 2015, AMIA.

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research

Jie Xu, Joshua C. Denny, Jyotishman Pathak, 2015, J. Am. Medical Informatics Assoc..

A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform

Joshua C. Denny, Jyotishman Pathak, William Thompson, 2016, CRI.

A multi-institution evaluation of clinical profile anonymization

Paul A. Harris, Raymond Heatherly, Joshua C. Denny, 2016, J. Am. Medical Informatics Assoc..

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example

Keith Marsolo, Casey Overby Taylor, Pedro J. Caraballo, 2018, J. Am. Medical Informatics Assoc..

DocUBuild: A Collaborative System to Enhance Dissemination and Discovery of Genomic Clinical Content

Luke V. Rasmussen, Casey L. Overby, 2017, AMIA.

Genomic Information for Clinicians in the Electronic Health Record: Lessons Learned From the Clinical Genome Resource Project and the Electronic Medical Records and Genomics Network

Casey Overby Taylor, Chunhua Weng, Marc S. Williams, 2019, Front. Genet..

Design Principles Developed through User-Centered and Socio-Technical Methods Improve Clinician Satisfaction, Speed, and Confidence in Pharmacogenomic Clinical Decision Support pdf

Justin Starren, Yinan Zheng, Luke V. Rasmussen, 2020, ArXiv.

Design and Implementation of a Structured Sequencing Report Format: A Multi-Stakeholder Perspective from eMERGE

Luke V. Rasmussen, Samuel J. Aronson, Darren C. Ames, 2017, AMIA.

Facilitating Genetics Aware Clinical Decision Support: Putting the eMERGE Infrastructure into Practice

Casey Overby Taylor, Luke V. Rasmussen, Samuel J. Aronson, 2021, ACI Open.

Design and Anticipated Outcomes of the eMERGE-PGx Project: A Multi-Center Pilot for Pre-Emptive Pharmacogenomics in Electronic Health Record Systems

Suzette J. Bielinski, Christopher G. Chute, Marylyn D. Ritchie, 2014, Clinical pharmacology and therapeutics.

Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci

Marylyn D. Ritchie, Joshua C. Denny, Shefali S. Verma, 2014, Molecular vision.

Genome-and Phenome-Wide Analysis of Cardiac Conduction Identifies Markers of Arrhythmia Risk Running title : Ritchie et al . ; QRS GWAS and PheWAS in electronic records

Christopher G. Chute, Marylyn D. Ritchie, Joshua C. Denny, 2013 .

Practical challenges in integrating genomic data into the electronic health record

Abel N. Kho, Peggy L. Peissig, Justin Starren, 2013, Genetics in Medicine.

Stakeholder engagement: a key component of integrating genomic information into electronic health records

Erica A. Bowton, Andrea Hartzler, Kadija Ferryman, 2013, Genetics in Medicine.