Kim-Anh Lê Cao

发表

PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2015, Bioinform..

Visualising associations between paired ‘omics’ data sets

Ignacio González, Kim-Anh Lê Cao, Sébastien Déjean, 2012, BioData Mining.

MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms

Stéphanie Bougeard, Kim-Anh Lê Cao, Aida Eslami, 2016, BMC Bioinformatics.

DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays

Kim-Anh Lê Cao, Florian Rohart, Amrit Singh, 2019, Bioinform..

DynOmics to identify delays and co-expression patterns across time course experiments

Kim-Anh Lê Cao, Bevan Emma Huang, Jasmin Straube, 2017, Scientific reports.

Integrative mixture of experts to combine clinical factors and gene markers

Geoffrey J. McLachlan, Kim-Anh Lê Cao, Emmanuelle Meugnier, 2010, Bioinform..

Multiclass classification and gene selection with a stochastic algorithm

Kim-Anh Lê Cao, Sébastien Gadat, Agnès Bonnet, 2009, Comput. Stat. Data Anal..

PhosphoPICK‐SNP: quantifying the effect of amino acid variants on protein phosphorylation

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2017, Bioinform..

Integration of Multi-Omics Single-Cell Data

Kim-Anh Lê Cao, Carlos Riveros, Casey P. Shannon, 2019 .

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

Philippe Besse, Kim-Anh Lê Cao, Simon Boitard, 2011, BMC Bioinformatics.

A novel approach for biomarker selection and the integration of repeated measures experiments from two assays

Kim-Anh Lê Cao, Rodolphe Thiébaut, Benoit Liquet, 2012, BMC bioinformatics.

Sparse canonical methods for biological data integration: application to a cross-platform study

Philippe Besse, Kim-Anh Lê Cao, Pascal G. P. Martin, 2009, BMC Bioinformatics.

integrOmics: an R package to unravel relationships between two omics datasets

Ignacio González, Kim-Anh Lê Cao, Sébastien Déjean, 2009, Bioinform..

Sorting the nuclear proteome

Mikael Bodén, Kim-Anh Lê Cao, Fabian A. Buske, 2011, Bioinform..

Model-based joint visualization of multiple compositional omics datasets

Luc Bijnens, Kim-Anh Lê Cao, Stijn Hawinkel, 2020, NAR genomics and bioinformatics.

Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets

Kim-Anh Lê Cao, Fangzhou Yao, Jeff Coquery, 2012, BMC Bioinformatics.

mixOmics: An R package for ‘omics feature selection and multiple data integration

Kim-Anh Lê Cao, Florian Rohart, Amrit Singh, 2017, bioRxiv.

ofw: An R Package to Select Continuous Variables for Multiclass Classification with a Stochastic Wrapper Method

Kim-Anh Lê Cao, Patrick Chabrier, P. Chabrier, 2008 .

Multi-omics data integration for the discovery of COVID-19 drug targets

Kim-Anh Lê Cao, Sonika Tyagi, Tyrone Chen, 2020 .

Mapping the stabilome: a novel computational method for classifying metabolic protein stability

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2012, BMC Systems Biology.

Multi-omics data harmonisation for the discovery of COVID-19 drug targets

Kim-Anh Lê Cao, Tyrone Chen, Sonika Tyagi, 2021 .

PLS-Discriminant Analysis (PLS-DA)

Kim-Anh Lê Cao, Zoe Marie Welham, 2021, Multivariate Data Integration Using R.

Multivariate Data Integration Using R

Kim-Anh Lê Cao, Zoe Marie Welham, Z. Welham, 2021 .

Visualisation for data integration

Kim-Anh Lê Cao, Zoe Marie Welham, 2021, Multivariate Data Integration Using R.

Principal Component Analysis (PCA)

Kim-Anh Lê Cao, Zoe Marie Welham, Z. Welham, 2021, Multivariate Data Integration Using R.

Multi-omics and biological systems

Kim-Anh Lê Cao, Zoe Marie Welham, 2021, Multivariate Data Integration Using R.

Key multivariate concepts and dimension reduction in mixOmics

Kim-Anh Lê Cao, Zoe Marie Welham, 2021, Multivariate Data Integration Using R.

Canonical Correlation Analysis (CCA)

Kim-Anh Lê Cao, Zoe Marie Welham, 2021, Multivariate Data Integration Using R.

timeOmics: an R package for longitudinal multi-omics data integration

Arnaud Droit, Kim-Anh Lê Cao, Marie-Pier Scott-Boyer, 2021, Bioinform..

Projection to Latent Structure (PLS)

Kim-Anh Lê Cao, Zoe Marie Welham, 2021, Multivariate Data Integration Using R.

Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2016, bioRxiv.

Insightful graphical outputs to explore relationships between two ‘omics’ data sets

Kim-Anh Lê Cao, Sébastien Déjean, Melissa J. Davis, 2013 .

Linear Mixed Effect Model Splines for Modelling and Analysis ofTime Course Data

Kim-Anh Lê Cao, Jasmin Straube, Emma Huang, 2015 .

Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes

Kim-Anh Lê Cao, Michelle M. Hill, Dorothy Loo, 2018, Diabetes Care.

Integration and variable selection of ‘omics’ data sets with PLS: a survey

Kim-Anh Lê Cao, Caroline Le Gall, C. L. Gall, 2011 .

Dynamic molecular changes during the first week of human life follow a robust developmental trajectory

Ryan R Brinkman, Hanno Steen, Cai Bing, 2019, Nature Communications.

DIABLO - an integrative, multi-omics, multivariate method for multi-group classification

Kim-Anh Lê Cao, Florian Rohart, Casey P. Shannon, 2017 .