Photosynthesis-related quantities for education and modeling

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[31]  A. Laisk,et al.  The size of the lumenal proton pool in leaves during induction and steady-state photosynthesis , 2011, Photosynthesis Research.

[32]  R. Goss,et al.  Violaxanthin and diadinoxanthin cycles as an important photoprotective mechanism in photosynthesis , 2011, Russian Journal of Plant Physiology.

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[35]  N. Nelson.  Photosystems and global effects of oxygenic photosynthesis. , 2011, Biochimica et biophysica acta.

[36]  J. Minagawa.  State transitions--the molecular remodeling of photosynthetic supercomplexes that controls energy flow in the chloroplast. , 2011, Biochimica et biophysica acta.

[37]  J. Rochaix.  Reprint of: Regulation of photosynthetic electron transport. , 2011, Biochimica et biophysica acta.

[38]  P. Pospíšil.  Enzymatic function of cytochrome b559 in photosystem II. , 2011, Journal of photochemistry and photobiology. B, Biology.

[39]  Roberta Croce,et al.  Light-harvesting and structural organization of Photosystem II: from individual complexes to thylakoid membrane. , 2011, Journal of photochemistry and photobiology. B, Biology.

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[41]  S. Allakhverdiev,et al.  Protein synthesis is the primary target of reactive oxygen species in the photoinhibition of photosystem II. , 2011, Physiologia plantarum.

[42]  Helena M. Amaro,et al.  Microalgae as sources of high added‐value compounds—a brief review of recent work , 2011, Biotechnology progress.

[43]  F. Wollman,et al.  Photosynthetic growth despite a broken Q-cycle , 2011, Nature communications.

[44]  M. Mimuro,et al.  Redox potentials of primary electron acceptor quinone molecule (QA)− and conserved energetics of photosystem II in cyanobacteria with chlorophyll a and chlorophyll d , 2011, Proceedings of the National Academy of Sciences.

[45]  W. Kühlbrandt,et al.  Electron tomography of plant thylakoid membranes. , 2011, Journal of experimental botany.

[46]  N.E. Belyaeva,et al.  PS II model based analysis of transient fluorescence yield measured on whole leaves of Arabidopsis thaliana after excitation with light flashes of different energies , 2011, Biosyst..

[47]  R. Furbank,et al.  C4 plants as biofuel feedstocks: optimising biomass production and feedstock quality from a lignocellulosic perspective. , 2011, Journal of integrative plant biology.

[48]  Ilya B. Kovalenko,et al.  Computer simulation of interaction of photosystem 1 with plastocyanin and ferredoxin , 2011, Biosyst..

[49]  Özge Sözer.  Carotenoids assist in assembly and functions of photosynthetic complexes in cyanobacteria , 2011 .

[50]  L. Staehelin,et al.  Three-Dimensional Architecture of Grana and Stroma Thylakoids of Higher Plants as Determined by Electron Tomography1[W][OA] , 2011, Plant Physiology.

[51]  Faouzi Horchani,et al.  Prolonged root hypoxia effects on ethylene biosynthesis and perception in tomato fruit , 2011, Plant signaling & behavior.

[52]  Csiro Plant,et al.  C_4 Plants as Biofuel Feedstocks: Optimising Biomass Production and Feedstock Quality from a Lignocellulosic Perspective , 2011 .

[53]  D. Kramer,et al.  The Importance of Energy Balance in Improving Photosynthetic Productivity1[W] , 2010, Plant Physiology.

[54]  S. Santabarbara,et al.  Bidirectional electron transfer in the reaction centre of photosystem I. , 2010, Journal of integrative plant biology.

[55]  G. Peltier,et al.  Auxiliary electron transport pathways in chloroplasts of microalgae , 2010, Photosynthesis Research.

[56]  W. Sakamoto.  Faculty Opinions recommendation of Arrangement of photosystem II and ATP synthase in chloroplast membranes of spinach and pea. , 2010 .

[57]  I. Kovalenko,et al.  Direct computer simulation of ferredoxin and FNR complex formation in solution , 2010, Physical biology.

[58]  J. Frank,et al.  Recent progress in the crystallographic studies of photosystem II. , 2010, Chemphyschem : a European journal of chemical physics and physical chemistry.

[59]  Kenji Takizawa,et al.  Isolation of the elusive supercomplex that drives cyclic electron flow in photosynthesis , 2010, Nature.

[60]  F. L. Crane.  Discovery of plastoquinones: a personal perspective , 2010, Photosynthesis Research.

[61]  Griffin M. Weber,et al.  BioNumbers—the database of key numbers in molecular and cell biology , 2009, Nucleic Acids Res..

[62]  D. Lazár,et al.  Modelling of light-induced chlorophyll a fluorescence rise (O-J-I-P transient) and changes in 820 nm-transmittance signal of photosynthesis , 2009, Photosynthetica.

[63]  Nathan Nelson,et al.  Structure Determination and Improved Model of Plant Photosystem I* , 2009, The Journal of Biological Chemistry.

[64]  M. Suorsa,et al.  Towards characterization of the chloroplast NAD(P)H dehydrogenase complex. , 2009, Molecular plant.

[65]  Roberta Croce,et al.  Functional architecture of higher plant photosystem II supercomplexes , 2009, The EMBO journal.

[66]  J. Golbeck,et al.  Protein-cofactor interactions in bioenergetic complexes: the role of the A1A and A1B phylloquinones in Photosystem I. , 2009, Biochimica et biophysica acta.

[67]  Fabrice Rappaport,et al.  Is the Redox State of the ci Heme of the Cytochrome b6f Complex Dependent on the Occupation and Structure of the Qi Site and Vice Versa? , 2009, The Journal of Biological Chemistry.

[68]  M. Winn,et al.  Structure of the c14 Rotor Ring of the Proton Translocating Chloroplast ATP Synthase* , 2009, The Journal of Biological Chemistry.

[69]  E. Tyystjärvi,et al.  Connectivity of photosystem II is the physical basis of retrapping in photosynthetic thermoluminescence. , 2009, Biophysical journal.

[70]  E. Yamashita,et al.  Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120* , 2009, Journal of Biological Chemistry.

[71]  J. Foster,et al.  Role of mrgA in peroxide and light stress in the cyanobacterium Synechocystis sp. PCC 6803. , 2009, FEMS microbiology letters.

[72]  S. Roy,et al.  Switching Light With Light in Chlorophyll-A Molecules Based on Excited-State Absorption , 2009, IEEE Transactions on NanoBioscience.

[73]  Jan Kern,et al.  Cyanobacterial photosystem II at 2.9-Å resolution and the role of quinones, lipids, channels and chloride , 2009, Nature Structural &Molecular Biology.

[74]  E. Schulze,et al.  Temporal variation in δ13C, wood density and microfibril angle in variously irrigated Eucalyptus nitens. , 2009, Functional plant biology : FPB.

[75]  K. Winter,et al.  Sun-shade patterns of leaf carotenoid composition in 86 species of neotropical forest plants. , 2009, Functional plant biology : FPB.

[76]  A. Friend,et al.  Photosynthesis in Global-Scale Models , 2009 .

[77]  Ladislav Nedbal,et al.  Photosynthesis in silico , 2009 .

[78]  P. Albertsson,et al.  Fragmentation and separation analysis of the photosynthetic membrane from spinach. , 2009, Biochimica et biophysica acta.

[79]  W. Chow,et al.  Dynamic flexibility in the structure and function of photosystem II in higher plant thylakoid membranes: the grana enigma , 2008, Photosynthesis Research.

[80]  Giovanni Finazzi,et al.  The dynamics of photosynthesis. , 2008, Annual review of genetics.

[81]  G. Renger,et al.  PS II model-based simulations of single turnover flash-induced transients of fluorescence yield monitored within the time domain of 100 ns–10 s on dark-adapted Chlorella pyrenoidosa cells , 2008, Photosynthesis Research.

[82]  S. Styring,et al.  Phosphorylation-dependent regulation of excitation energy distribution between the two photosystems in higher plants. , 2008, Biochimica et biophysica acta.

[83]  Stefan Steigmiller,et al.  The thermodynamic H+/ATP ratios of the H+-ATPsynthases from chloroplasts and Escherichia coli , 2008, Proceedings of the National Academy of Sciences.

[84]  Fabrice Rappaport,et al.  Primary photochemistry and energetics leading to the oxidation of the (Mn)4Ca cluster and to the evolution of molecular oxygen in Photosystem II , 2008 .

[85]  P. Fromme,et al.  X-ray Crystallography of Photosynthetic Proteins , 2008 .

[86]  Gernot Renger,et al.  Primary processes of photosynthesis : principles and apparatus , 2008 .

[87]  Luca Dall’Osto,et al.  Zeaxanthin Has Enhanced Antioxidant Capacity with Respect to All Other Xanthophylls in Arabidopsis Leaves and Functions Independent of Binding to PSII Antennae1[C][W] , 2007, Plant Physiology.

[88]  Kenji Takizawa,et al.  The thylakoid proton motive force in vivo. Quantitative, non-invasive probes, energetics, and regulatory consequences of light-induced pmf. , 2007, Biochimica et biophysica acta.

[89]  W. Chow,et al.  The stoichiometry of the two photosystems in higher plants revisited. , 2007, Biochimica et biophysica acta.

[90]  R. Strasser,et al.  A non-invasive assay of the plastoquinone pool redox state based on the OJIP-transient , 2007, Photosynthesis Research.

[91]  Nathan Nelson,et al.  The structure of a plant photosystem I supercomplex at 3.4 Å resolution , 2007, Nature.

[92]  Henrik Vibe Scheller,et al.  Structure, function and regulation of plant photosystem I. , 2007, Biochimica et biophysica acta.

[93]  A. Marion-Poll,et al.  The Arabidopsis aba4-1 Mutant Reveals a Specific Function for Neoxanthin in Protection against Photooxidative Stress[W] , 2007, The Plant Cell Online.

[94]  G. Giuliano,et al.  Lutein is needed for efficient chlorophyll triplet quenching in the major LHCII antenna complex of higher plants and effective photoprotection in vivo under strong light , 2006, BMC Plant Biology.

[95]  A. Bulychev,et al.  Effects of sulfur limitation on photosystem II functioning in Chlamydomonas reinhardtii as probed by chlorophyll a fluorescence , 2006 .

[96]  K. Tomizawa,et al.  Ferredoxin limits cyclic electron flow around PSI (CEF-PSI) in higher plants--stimulation of CEF-PSI enhances non-photochemical quenching of Chl fluorescence in transplastomic tobacco. , 2006, Plant & cell physiology.

[97]  Anthony W. D. Larkum,et al.  Chlorophyll a Fluorescence A Signature of Photosynthesis. , 2006 .

[98]  Stenbjörn Styring,et al.  Dimeric and Monomeric Organization of Photosystem II , 2006, Journal of Biological Chemistry.

[99]  Nathan Nelson,et al.  Structure and function of photosystems I and II. , 2006, Annual review of plant biology.

[100]  M. G. Müller,et al.  Charge separation kinetics in intact photosystem II core particles is trap-limited. A picosecond fluorescence study. , 2006, Biochemistry.

[101]  W. Lubitz,et al.  Ultrafast transient absorption studies on photosystem I reaction centers from Chlamydomonas reinhardtii. 2: mutations near the P700 reaction center chlorophylls provide new insight into the nature of the primary electron donor. , 2006, Biophysical journal.

[102]  P. Dutton,et al.  Application of Marcus Theory to Photosystem I Electron Transfer , 2006 .

[103]  T. Morosinotto,et al.  LHCI: The Antenna Complex of Photosystem I in Plants and Green Algae , 2006 .

[104]  Govindjee,et al.  Chlorophyll a Fluorescence: A Signature of Photosynthesis , 2006 .

[105]  P. Sétif,et al.  Electron Transfer from the Bound Iron–Sulfur Clusters to Ferredoxin/Flavodoxin: Kinetic and Structural Properties of Ferredoxin/Flavodoxin Reduction by Photosystem I , 2006 .

[106]  J. Golbeck.  Photosystem I : the light-driven plastocyanin : ferredoxin oxidoreductase , 2006 .

[107]  G. Tollin,et al.  Electron Transfer From Ferredoxin and Flavodoxin to Ferredoxin:NADP+ Reductase , 2006 .

[108]  P. Fromme,et al.  Structural Analysis of Cyanobacterial Photosystem I , 2006 .

[109]  Neil Solomon,et al.  Amazing numbers in biology , 2006 .

[110]  W. W. Adams,et al.  Photoprotection, photoinhibition, gene regulation, and environment , 2006 .

[111]  Jan Kern,et al.  Towards complete cofactor arrangement in the 3.0 Å resolution structure of photosystem II , 2005, Nature.

[112]  Daniel Picot,et al.  Spectral and redox characterization of the heme ci of the cytochrome b6f complex. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[113]  H. Niimi,et al.  Changes in Soil Protease Activity and Numbers of Culturable Bacteria in Upland Fields by the Application of Liquid Livestock Feces , 2005 .

[114]  R. Strasser,et al.  In intact leaves, the maximum fluorescence level (F(M)) is independent of the redox state of the plastoquinone pool: a DCMU-inhibition study. , 2005, Biochimica et biophysica acta.

[115]  M. Grabolle,et al.  Energetics of primary and secondary electron transfer in Photosystem II membrane particles of spinach revisited on basis of recombination-fluorescence measurements. , 2005, Biochimica et biophysica acta.

[116]  W. Gruszecki,et al.  Carotenoids as modulators of lipid membrane physical properties. , 2005, Biochimica et biophysica acta.

[117]  Egbert J Boekema,et al.  Supramolecular organization of thylakoid membrane proteins in green plants. , 2005, Biochimica et biophysica acta.

[118]  J. Messinger,et al.  Mechanism of Photosynthetic Oxygen Production , 2005 .

[119]  H. Witt.  Photosystem II: Structural Elements, the First 3D Crystal Structure and Functional Implications , 2005 .

[120]  C. Yocum,et al.  The Calcium and Chloride Cofactors , 2005 .

[121]  B. Diner,et al.  The Redox-Active Tyrosines YZ and YD , 2005 .

[122]  J. Barber,et al.  Refined X-Ray Structure of Photosystem II and Its Implications , 2005 .

[123]  B. Green,et al.  Distal and Extrinsic Photosystem II Antennas , 2005 .

[124]  J. Barber,et al.  Structural analysis of the photosystem II core/antenna holocomplex by electron microscopy , 2005 .

[125]  M. Ikeuchi,et al.  The Low Molecular Weight Proteins of Photosystem II , 2005 .

[126]  K. Satoh,et al.  Photosystem II, the Light-Driven Water: Plastoquinone Oxidoreductase , 2005 .

[127]  Petra Fromme,et al.  Structure of cyanobacterial Photosystem I , 2005, Photosynthesis Research.

[128]  M. Schöttler,et al.  The Role of Plastocyanin in the Adjustment of the Photosynthetic Electron Transport to the Carbon Metabolism in Tobacco1 , 2004, Plant Physiology.

[129]  L. Chi,et al.  Transversal and lateral exciton energy transfer in grana thylakoids of spinach. , 2004, Biochemistry.

[130]  E. Stauber,et al.  Comparison of the subunit compositions of the PSI-LHCI supercomplex and the LHCI in the green alga Chlamydomonas reinhardtii. , 2004, Biochemistry.

[131]  Janet L. Smith,et al.  Evolution of photosynthesis: time-independent structure of the cytochrome b6f complex. , 2004, Biochemistry.

[132]  James Barber,et al.  Architecture of the Photosynthetic Oxygen-Evolving Center , 2004, Science.

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[134]  John F. Allen,et al.  Cytochrome b6f: structure for signalling and vectorial metabolism. , 2004, Trends in plant science.

[135]  D. Kramer,et al.  How acidic is the lumen? , 1999, Photosynthesis Research.

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[137]  A. B. Hope,et al.  The kinetics of reactions around the cytochrome bf complex studied in an isolated system , 1994, Photosynthesis Research.

[138]  J. Bernarding,et al.  Two sites of photoinhibition of the electron transfer in oxygen evolving and Tris-treated PS II membrane fragments from spinach , 1991, Photosynthesis Research.

[139]  A. Wild,et al.  Structure and function of ferredoxin-NADP+-oxidoreductase , 1988, Photosynthesis Research.

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[142]  Hartmut K. Lichtenthaler,et al.  Light Adaptation and Senescence of the Photosynthetic Apparatus. Changes in Pigment Composition, Chlorophyll Fluorescence Parameters and Photosynthetic Activity , 2004 .

[143]  I. Vass,et al.  Light Emission as a Probe of Charge Separation and Recombination in the Photosynthetic Apparatus: Relation of Prompt Fluorescence to Delayed Light Emission and Thermoluminescence , 2004 .

[144]  Wim J. Vredenberg,et al.  System Analysis and Photoelectrochemical Control of Chlorophyll Fluorescence in Terms of Trapping Models of Photosystem II: A Challenging View , 2004 .

[145]  Seymour Steven Brody,et al.  Fluorescence lifetime, yield, energy transfer and spectrum in photosynthesis, 1950–1960* , 2004, Photosynthesis Research.

[146]  John F. Allen,et al.  Plastoquinone redox control of chloroplast thylakoid protein phosphorylation and distribution of excitation energy between photosystems: discovery, background, implications , 2004, Photosynthesis Research.

[147]  A. J. Bendich,et al.  Changes in chloraplast number during pea leaf development. An analysis of a protoplast population , 2004, Planta.

[148]  Govindjee,et al.  Chlorophyll a Fluorescence , 2004, Advances in Photosynthesis and Respiration.

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[150]  P. Joliot,et al.  Excitation transfer between photosynthetic units: the 1964 experiment , 2004, Photosynthesis Research.

[151]  L. Staehelin,et al.  Chloroplast structure: from chlorophyll granules to supra-molecular architecture of thylakoid membranes , 2004, Photosynthesis Research.

[152]  G. Zellnig,et al.  Morphological and quantitative data of plastids and mitochondria within drought-stressed spinach leaves , 2004, Protoplasma.

[153]  Nathan Nelson,et al.  Crystal structure of plant photosystem I , 2003, Nature.

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[155]  Dusan Lazár,et al.  Chlorophyll a fluorescence rise induced by high light illumination of dark-adapted plant tissue studied by means of a model of photosystem II and considering photosystem II heterogeneity. , 2003, Journal of theoretical biology.

[156]  P. Fromme,et al.  Structure and Function of the Antenna System in Photosystem I , 2003 .

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[169]  R. Strasser,et al.  Estimation of the energetic connectivity of PS II centres in plants using the fluorescence rise O—J—I—P fitting of experimental data to three different PS II models , 2001 .

[170]  D. Kramer,et al.  Contribution of electric field (Δψ) to steady-state transthylakoid proton motive force (pmf) in vitro and in vivo. Control of pmf parsing into Δψ and ΔpH by ionic strength , 2001 .

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